| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4621 |
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| Symbol | |
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| ID | 4583126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008688 |
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| Strand | + |
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| Start bp | 106301 |
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| End bp | 107602 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639771927 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_918380 |
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| Protein GI | 119387346 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.22928 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGGTG TTTTCGGAGC CGCGGTCGGC TTTCTCATGA TGCTGGGCCT GATGCTGACG
GGCTTGCCGG TGGCGGTCGC GCTGTTTCTG ACAGCATTCA TCGGCGCCTG GGCCTTTCTG
GGTCTGCCTA CGCTTCTTTC CTTCGGCAAC CAGATGTGGA GCGGACAGAA CGACTTTATC
CTGACCGCTA TCCCGCTTTT CATCTTTCTG GGCGAAATCC TGGTGCGCTC GGGCGTGACG
GACGGACTTT ATCGCTGCCT TTCGGATTGG CTGCGGCGCC TTCCGGGCGG GTTGCTGCAT
ACGAACATCG GGGCAAGCAC CTTCTTTTCG GCGGTTTCCG GTTCGTCGGT GGCAACGGCC
GCCACCATCG GCACGGTGGC CATGCCGATC ATGAAACAGC GCGGCTACGA TGCCCGGCTG
ACCACGGGCT CCATCGCCGC TGGGGCTACG CTGGGCATCC TGCTGCCACC CTCGATCAAC
ATGATCATCT ACGGCTCGAT GACGAATACC TCGATCGGGC AGCTTTTCGC GGCCGGTGTG
GTGCCGGGAC TGATCCTTGC CGGGCTGTTC ATGGTGCTGA TCGCCGGGGT CTGCATCCTG
CGGCCCGAAC TTGCCGGGCC GATGCTGCCC GCGCGGTCCT GGCCCGAGAA AATCGCGAGC
CTCGTCGATA TCATCCCGCC GATCGTGATC TTCCTGATCG TGATGGGGAC GATCTATCTG
GGCTGGGCCA CGCCGACCGA ATCGGCGGCC ATCGGGGTCG TCTGCGGTCT TGGGGTCGCC
ATCGCCAAAC GACGTCTTTC GCTGTCGATG ATGCATGAAT GCATGATATC GACCGTGCGC
ATCTCGGCGA TGATCCTGCT GATCATGGTG GCGGCGCACT TCCTGAACTT CGTGATCGGG
GTGCTGGGCA TTCCGCAGGC ACTGACGGGC TTTGTCGCCG ACGTCGGGGC GGGACCGCTT
CAGATCATCC TGCTGCTGAT GGTCTTCTAC CTGGTCCTCG GCTGCTTCAT GGAGACGCTG
TCGATGATGA TCGCCACGCT TCCGGTCGTC TTTCCGCTGG TCCTGCATCT GGGGATCGAC
CCGGTGTGGT TCGGGATCTT CCTTGTCGTG ATGATGGAGA TCGGGCTGAT CACACCCCCC
ATCGGCATGA ACCTCTATGT CGTGCAGGGC GTGCGGGGGC ATGGCTCGAT CATGGACGTG
ATCTATGGCG CACTGCCCTT CGTGCTGCTG ATGCTGGGCT TTGTCGGCCT GCTCATCGTG
TGGCCGCAGA TGGCCCTTTG GCTGCCGCAG AGGCTGTTCT GA
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| Protein sequence | MIGVFGAAVG FLMMLGLMLT GLPVAVALFL TAFIGAWAFL GLPTLLSFGN QMWSGQNDFI
LTAIPLFIFL GEILVRSGVT DGLYRCLSDW LRRLPGGLLH TNIGASTFFS AVSGSSVATA
ATIGTVAMPI MKQRGYDARL TTGSIAAGAT LGILLPPSIN MIIYGSMTNT SIGQLFAAGV
VPGLILAGLF MVLIAGVCIL RPELAGPMLP ARSWPEKIAS LVDIIPPIVI FLIVMGTIYL
GWATPTESAA IGVVCGLGVA IAKRRLSLSM MHECMISTVR ISAMILLIMV AAHFLNFVIG
VLGIPQALTG FVADVGAGPL QIILLLMVFY LVLGCFMETL SMMIATLPVV FPLVLHLGID
PVWFGIFLVV MMEIGLITPP IGMNLYVVQG VRGHGSIMDV IYGALPFVLL MLGFVGLLIV
WPQMALWLPQ RLF
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