Gene Pden_4572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4572 
Symbol 
ID4583311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp56439 
End bp57800 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content68% 
IMG OID639771878 
Productmajor facilitator transporter 
Protein accessionYP_918331 
Protein GI119387297 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.359582 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGTA AGAAGACCTT TGCCCGGGTT GCTATCAGCC CGCGCCCTTG CACGCCACCC 
ACTCCGGCCG GCCGCGGGAC CGGCCCTTCG TCGGCGCCGC GGGACTTTGC GGACATTGCG
CCATGGCCGC GGACCATGCA TCAGTTCGCC CGGACCAGCC AACGGAACGC CATGCCCAAG
TCTTTGCAGA ACCCCGCCCC GCCCATCCCG CCAACGGTCT GGATGCTGGG CATCGTCAGC
CTGCTGATGG ACGTGTCGTC CGAGATGATC AACACCCTGC TGCCGCTCTG GCTGGCGGGC
GGGCTTGGCG CGTCGGCCCT CGCCATCGGC TTCATCGAGG GGCTCTCGGT CGCCATCGCC
ACCGCGACCA GGTTCCTCTC GGGCGTGTTC GCCGACTGGA GCCGCAGGGC GAAACCGCTG
GCGGTTCTGG GCTATGGGCT GGGTGCGCTG TCGCGGCTGA TCTTTCCGCT GGCGATCAGC
ATCGACCAGA TCGTGCTGGC CAAGGCATTG GACCGGGTCG GCAAGGGCAT CCGCAGCACG
CCGCGCGACG CCATCATCGC CGCCGTCGCC CCGCCGCAGA TCCGTGGCGC AAGCTTCGGA
TTGCGCAAGT CGCTGGACAC GGTGGGCGGC TTCCTGGGGC CGCTGGTGGC GGTCGGAGCG
ATGATCCTGC TGGCGGGCGA CATCGCCGCG GTCTTCTGGA TCGCGGCGAT TCCCGCCGCC
CTCGCCATGC TGGTGCTGGT CCTGGCCGTG CATGAGCCCG AACCAAGCCG TGTGGCAAAG
CGATCAGGCT TCCGCCTTGC CGACGCATTC CGGCTGAACC GCGCCGTCTG GGCGGTGATC
GGGCTGGCCG CCATCATCAT GCTCGCGCGG TTCAGCGAGG CCTTCGTGCT GCTGAAGGCG
CTGGAGGCCG GGTTTGCCCC GACCTGGGTT CCCCTGGCCA TGGTGGTCAT GCATGCGGCC
TATGGGCTGA CGGCATGGCC GGTCGGTCGC CTCTCGGACC GGATCGGGAC GGCGGGGCTG
CTGTCGTGGA GCCTGGTCTT CCTGACGATC GCGCATCTGA CGCTGGCATT CGCCGGGACG
GTCTGGGCCT ATATCCTGGG AACCGTGTTC TGGGGCCTGC ACATGGGATT TTCCCAAGGG
CTTCTGGGGG CGATGATCGC CGCCGCCACG CCCGATGCGA TCAGGGGCAG CGCCTTCGGC
ACGTTCAACC TGGTGGCCGG CGTGGTGATG CTGGTGGGCA ATACTGCCGC CGGATGGTTC
TGGCACAGCG CGGGATCGCA GGCGCCCTTC CTGATCGGTG CCGGCCTCTC GGGCATCGCC
ATGCTGTGGA TCGCGCTCCG GCAGCGGCGG TTCCACCTTT GA
 
Protein sequence
MSGKKTFARV AISPRPCTPP TPAGRGTGPS SAPRDFADIA PWPRTMHQFA RTSQRNAMPK 
SLQNPAPPIP PTVWMLGIVS LLMDVSSEMI NTLLPLWLAG GLGASALAIG FIEGLSVAIA
TATRFLSGVF ADWSRRAKPL AVLGYGLGAL SRLIFPLAIS IDQIVLAKAL DRVGKGIRST
PRDAIIAAVA PPQIRGASFG LRKSLDTVGG FLGPLVAVGA MILLAGDIAA VFWIAAIPAA
LAMLVLVLAV HEPEPSRVAK RSGFRLADAF RLNRAVWAVI GLAAIIMLAR FSEAFVLLKA
LEAGFAPTWV PLAMVVMHAA YGLTAWPVGR LSDRIGTAGL LSWSLVFLTI AHLTLAFAGT
VWAYILGTVF WGLHMGFSQG LLGAMIAAAT PDAIRGSAFG TFNLVAGVVM LVGNTAAGWF
WHSAGSQAPF LIGAGLSGIA MLWIALRQRR FHL