Gene Pden_4553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4553 
Symbol 
ID4583292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp35633 
End bp37444 
Gene Length1812 bp 
Protein Length603 aa 
Translation table11 
GC content69% 
IMG OID639771859 
Productcyclic nucleotide-binding protein 
Protein accessionYP_918312 
Protein GI119387278 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.984926 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACA TCGCCGCATT CATCGCCTCG GTTCATCCCT ATGACAGCCT GCCGCAGGAC 
GAGCTGGCGC GGGCCGCGGC GTCGTTCAAG CGCAGGACCT ATCCGGCCGG CAGCGTGATC
TATCGCCATG GCGACCGGCT GGCGGGGCTT TACCTGATCG AAAGCGGTCT GGTCCGGGTC
TCGGATGCTG CCGGGGATTC CGTTTCGGAA CTGGTGGCGC GCAATTCATT CGGCGAAAGG
GGGCTGCTGC GCGACGGGGT GGCGGTGACC ACGGCGACCG CCGTCGAGGA TACGACCGTG
CTGATGCTGC CGCGCGCCGA ACTGATGCGG TTGATCGGCA GCCATCGCGC GGTGGCGCGT
TTCTTCGACC GCAGCGGCCT GCCCGGCGAC CGCGAGAGCG CTCTGGCGCT GCTGAAGGTC
GGGGATTTGA TCGGCGGGCA GGTGCCGCTG AGCTGCACCC CCCAGACCCC CGCCATCGAG
GCCGCCCGCG CCATGCGCGA CGCCCGCGTC AGCAGCATCG GCGTGCTGGA CGGGGACCGG
CTGGTCGGGC TGGTCACCAT CCGCGACATC TCGAACCGCA TCGTTGCCGA GGGGCGCGAC
GCGAATGTGC CGGTTGCGCA GGTGATGACG CCCGACCCGA TCACGCTGTC GCCCTTGGAG
CTGGGCTATG ACGTGCTCAA CATCATGCTC GAGCGCCGCA TCGGCCATCT GCCGGTGGTC
GAGAAGGGCC GCTTCGTCGG CATGGTCAGC CAGACCGACC TGACGCGGGT GCAGGCGATC
TCGGCCTCGG CGCTGATCCG CGACATCGCG CAATCCGAGG ATGTCGGCGA CATGGCGGCG
GCGACCGCAC GCATTCCCGA ACTGCTGCTG CAACTGGTCA ACGGCCATCA CCGGCACGAA
ACCATCACCC GCATGATCAC CGACATTGCC GATGCGGTGA CCCGGCGCCT ACTGGTCATG
GCCGAGGTGC GCCTGGGTCC GCCGCCCGGC CCGTGGCTGT GGGCGGCCTG CGGCAGCCAG
GGGCGGCAGG AACAGACCGG CGTGTCGGAT CAGGACAATT GCCTGATTCT CGGCGACGAT
TGCGACCCGG ACGATCCCTG GTTCGCCGAG CTTGCGCGCT TTGTCTGCGA CGGGTTGAAC
GCATGCGGCT ATGTCTATTG CCCGGGCGAG ATGATGGCCA TCACGCCGCG CTGGCGCCAG
CCGCGCCGCG TCTGGCGCGG TTATTTCCAC GACTGGATCA CCCATCCCAG CCCCGAGGCG
CAGATGCTGG CCTCGGTCAT GTTCGACCTG CGCGCCATCG GCGGCGATGC CGCGCTGCTG
GACGGGCTGC AGGCCGAGAC GCTGCGGATG GCGGCGAAGA ACTCGATCTT CGTGGCGCAT
ATGATCTCGA ACGCGCTGAA GCACCGCCCG CCCCTGGGGC TGATCGGCGG CTTTGCGACC
GTGCGCACCG GCGAGCATCG CAACCAGATC GACATGAAGC TAAGCGGCGT CGTGCCGGTG
TCCGACCTGG CGCGGATCTA TGCGTTGCAG GGGCAGCTGA CCCCGGTCAA TACCCGCGCC
CGGCTGGTCG AGGCGCAGGG GGCGGGCATC ATCTCGGGCA GCGGCGCGCG CGACCTGATC
GCGGCCTACG ACCTGATCCA GACCACGCGG CTGGAGAACC AGGCCGCGCA GATCCGCGCC
GGCGAACGGC CGGGGAACCA CCTGTCCCCC GCCGCGCTGC CCGATTTCCA GCGCAGCCAC
CTGCGCGACG CCTTCGTGGT GGTGCGGGGG ATGCAATCGG CGCTGGGCCA TGGCAAGGGA
ATGTTGGGAT GA
 
Protein sequence
MTDIAAFIAS VHPYDSLPQD ELARAAASFK RRTYPAGSVI YRHGDRLAGL YLIESGLVRV 
SDAAGDSVSE LVARNSFGER GLLRDGVAVT TATAVEDTTV LMLPRAELMR LIGSHRAVAR
FFDRSGLPGD RESALALLKV GDLIGGQVPL SCTPQTPAIE AARAMRDARV SSIGVLDGDR
LVGLVTIRDI SNRIVAEGRD ANVPVAQVMT PDPITLSPLE LGYDVLNIML ERRIGHLPVV
EKGRFVGMVS QTDLTRVQAI SASALIRDIA QSEDVGDMAA ATARIPELLL QLVNGHHRHE
TITRMITDIA DAVTRRLLVM AEVRLGPPPG PWLWAACGSQ GRQEQTGVSD QDNCLILGDD
CDPDDPWFAE LARFVCDGLN ACGYVYCPGE MMAITPRWRQ PRRVWRGYFH DWITHPSPEA
QMLASVMFDL RAIGGDAALL DGLQAETLRM AAKNSIFVAH MISNALKHRP PLGLIGGFAT
VRTGEHRNQI DMKLSGVVPV SDLARIYALQ GQLTPVNTRA RLVEAQGAGI ISGSGARDLI
AAYDLIQTTR LENQAAQIRA GERPGNHLSP AALPDFQRSH LRDAFVVVRG MQSALGHGKG
MLG