Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_4508 |
Symbol | |
ID | 4583058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | - |
Start bp | 1722683 |
End bp | 1724461 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639771815 |
Product | TrkA domain-containing protein |
Protein accession | YP_918268 |
Protein GI | 119387213 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0471] Di- and tricarboxylate transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.951327 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGGCT TTGAACTGAC CGGAACCAAT GCGGCGATCG CGATGCTGCT CATCGTGGTC GTCATGTTCA TCGAGTTCAT TCGCGAAAAG CGCCCGCCCG AGGTGGTGGC CATCGGCACC GCCGCCGTGA TGATGGTGCT GGGCCTCTTG CCGATCAAGG ACGCCGCCGG CGTGCTGTCG AACTCGGCGC CCTGGACCAT CGCCTTCATG TTCCTGATCA TGGGCGGGCT GATGCGCACC GGCGCGCTGG AAATCATGTC GCGGCTCGTC ACCATGCGGG CGGCGAGCCA TCCGCGTTTC ACCATCGGCG CGCTGTTCCT GTTCGTGATC GTGGCCTCGG CGATCATGAA CAATACGCCG GTGGTGGCGG TGATGATCCC GATCTTCATC CAGCTGGCGC TGCGGCTGGG GCTCTCGCCG TCGAAGCTGC TGATGCCGCT GAGCTATTTC ACCATCCTGG GCGGGATGAT GACGTTGATC GGCACCTCGA CCAACCTGCT GGTGGACGGC GTGGCGCGCG AGCAGGGCAT GGCGCCCTTC ACCATCTTCG AGATCGCCCC GGTCGGTGTC GCCATCACGC TTGCCGGCGT CCTCTATTTC GCGCTCCTGG GCAAGCGATT GCTGCCCGAT CGCACCTCGC TGGCGGGCTT TCTCGGCACC CGGCGCGAGA TGAAATATTT CACCGAGGTC GCCATCCCCG AGGATTCCAG CCTGGTCGGC CAGCCGGTCC TGACGGCGCC GATCTTCAAG CGCGATGCGG TGCGGGTGAT CGACGTGCTG CGCGGCGATG CCTCGCTGCG GCGCAACCTG GCCGAGGTGG TGCTGGAGCC GGGCGACCGG GTCGTGCTGC GCTCGGAAAT GGCCGACCTG CTGGAAATGC AGTCCAACAA GAACTTCCAG ATGGTGGACA AGCTGAGCTC GGTCGCCACC GAGACGGTCG AGGTGCTTAT TTCGCCGGGC GCGCGGCTGG TCGGGCGGCG GCTTGGCGAC ATGCGCCTGC GCCGGCGCTA TGGCGTCTAC GTTCTGGCCG CGCATCGCCG CAGCCAGAAC ATCGGCCGCC AGCTCGACGA TCTGGTGGTG CAGGTCGGCG ACACGCTGCT GCTGGAAGGC GCGCCCGAGG ATATCGGGCG GCTCGCCGCC GACATGGAGC TGGTCGATGT CTCGCGCCCC TCGGCCCGGC CGTTCCGGCG CGAGCGCGCG CCGATCGCGA TCCTGTCCCT CTTGGCGGTG GTGTCGCTGG CGGCTCTGGA CGTCGCGCCG ATCATGGCGC TGTCCTTTCT GGCGGCGGCG ATGGTCCTGA TCACCCGCTG CGTCGATGCC GAGGAGGCCT TCGCCTTTGT CGACGCCCGG CTGATGGCGA TGATCTTCGC CATGCTGGCG GTGGGCGAGG CGCTGGAGCA TACCGGAACG GTCACTCTGG TGGTGGATGC GGTGGCCCCG CATCTTGCCG GCCTGCCGCC CTTTGCGACG CTGATCGCGG TCTATTTCCT TGGCCTGGTC ATGACCGAGG TGTTGTCGAA CAATGCCGTC GCGGTGCTTT TGACGCCGGT GGCCATCGCG CTGGCGAAAT CGCTGGGCCA CGATCCCCGT GCCTATGTCG TGGCGGTGAT GTTCTCGGCC ACGGTCGCCT TCGCCACGCC CATCGGCTAT CAGACCCACC TGATGGTCTA TGGCCCCGGC GGCTACAGGT TCAGCGACTT CGTCAAGGTC GGTGTGCCCC TGGACATCAT CTGCGGCATC GTCGCCTGCC TGACCATCCC GCTGTTCTGG CCGCTGTGA
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Protein sequence | MLGFELTGTN AAIAMLLIVV VMFIEFIREK RPPEVVAIGT AAVMMVLGLL PIKDAAGVLS NSAPWTIAFM FLIMGGLMRT GALEIMSRLV TMRAASHPRF TIGALFLFVI VASAIMNNTP VVAVMIPIFI QLALRLGLSP SKLLMPLSYF TILGGMMTLI GTSTNLLVDG VAREQGMAPF TIFEIAPVGV AITLAGVLYF ALLGKRLLPD RTSLAGFLGT RREMKYFTEV AIPEDSSLVG QPVLTAPIFK RDAVRVIDVL RGDASLRRNL AEVVLEPGDR VVLRSEMADL LEMQSNKNFQ MVDKLSSVAT ETVEVLISPG ARLVGRRLGD MRLRRRYGVY VLAAHRRSQN IGRQLDDLVV QVGDTLLLEG APEDIGRLAA DMELVDVSRP SARPFRRERA PIAILSLLAV VSLAALDVAP IMALSFLAAA MVLITRCVDA EEAFAFVDAR LMAMIFAMLA VGEALEHTGT VTLVVDAVAP HLAGLPPFAT LIAVYFLGLV MTEVLSNNAV AVLLTPVAIA LAKSLGHDPR AYVVAVMFSA TVAFATPIGY QTHLMVYGPG GYRFSDFVKV GVPLDIICGI VACLTIPLFW PL
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