| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4490 |
|---|
| Symbol | ddl |
|---|
| ID | 4583040 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1705923 |
|---|
| End bp | 1706858 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639771797 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_918250 |
|---|
| Protein GI | 119387195 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCAGA AATTGGCGGG CAGGTCGAGC AGGACGGCCC CGAAAGTCGT GGTCCTGATG
GGCGGACCCT CGGCCGAGCG CGAGGTGTCG CTTTCGTCGG GGCGTGAATG CGCGGTTGCG
CTGCGGCAGG CGGGCTATGA AGTCGTCGAA TTGGATGCGG GCAGGGATCT GCCCGCGCGT
CTGGCCGAGC ATGCGCCGGA CGTGGTCTTC AACGCCCTGC ATGGCCGCTG GGGCGAGGAT
GGCTGCGTGC AGGGCCTGCT GGAATGGCTG GGCTGGCGCT ATACGCATTC CGGCGTGCTG
GCCTCGGCGC TGGCCATGGA CAAGTCCCGC GCCAAGGAGA TCCTGCGCCT TGCCGGCCTG
CCGGTGCTGG ACAGCCTGAT CGCCGATGCC GACGAGGTGC GCGCCCGCCA CGTCATGGCG
CCGCCCTATG TGGTCAAGCC GAACGACGAG GGCTCTTCGG TCGGGGTCTA TATCGTGCAC
GAGGCCGCGA ACGGCCCGCC GCAGCTTTCC GACAAGATGC CCGCGCGGGT CATGGTCGAA
ACCTATGCCC CGGGGCGCGA GCTGACCGTC GCCGTGCTGG GCGACCGCGC GCTTGGCGTG
ACCGAGATCG TTACCGAGGG CTGGTATGAC TACGACGCCA AATACACGCC CGGCGGCTCT
CGCCACGTCA TCCCGGCCGA CATCCCCGAG GAAATCGCCG CCGCCTGCCG CGATCATGCG
GTGCAGGCGC ATCGGGCGCT GGGGTGCCGC GGGCTGACCC GCAGCGATTT CCGCTGGGAC
GAAAGCCGCG GGCTGGACGG GCTGATCATC CTCGAGGTGA ACACCCAGCC CGGCATGACG
CCCACCTCGC TCGCGCCCGA GCAGGCGGCC CATTCCGGCA TGGACTTTCC CGCGCTTTGC
CGCTGGATCG TCGAGGAGGC GCTATGCAGG GCCTGA
|
|---|
| Protein sequence | MRQKLAGRSS RTAPKVVVLM GGPSAEREVS LSSGRECAVA LRQAGYEVVE LDAGRDLPAR
LAEHAPDVVF NALHGRWGED GCVQGLLEWL GWRYTHSGVL ASALAMDKSR AKEILRLAGL
PVLDSLIADA DEVRARHVMA PPYVVKPNDE GSSVGVYIVH EAANGPPQLS DKMPARVMVE
TYAPGRELTV AVLGDRALGV TEIVTEGWYD YDAKYTPGGS RHVIPADIPE EIAAACRDHA
VQAHRALGCR GLTRSDFRWD ESRGLDGLII LEVNTQPGMT PTSLAPEQAA HSGMDFPALC
RWIVEEALCR A
|
|---|
| |