| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4458 |
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| Symbol | |
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| ID | 4583008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 1669248 |
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| End bp | 1671560 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639771765 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_918218 |
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| Protein GI | 119387163 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.135865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.821812 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCCCG TGGACGCAAC CGACCGCATT GCCCGCACCA TCGCCGCCGA GATCAGCGCC
AGCCCCACCC AGGTCGCTGC GGCCTCGGCC TTGCTGGACG GGGGTGCGAC CGTGCCCTTC
GTCGCGCGCT ATCGCAAGGA GGTGACGGGC GGGCTGGACG ACACGCAGCT GCGCACGCTG
TCGGAACGGC TGGCCTATCT GCGCGAACTC GAGGCGCGGC GGGTCTCGAT CCTCGAATCG
ATCAAGGGGC AGGGCAAGCT GACCGACGAA CTGGCCCGCG CCATCGCCGG GGCCGGGACC
AAGGCCACGC TCGAGGACAT CTACCTGCCC TTCAAGCCCA AGCGCCGCAC CAAGGCGATG
ATCGCCCGGG AAAACGGGCT GGAGCCGCTG TTGCGTGCCA TCCAGGAAAA CCGTGCCGCC
GAACCCGAGG CGCTGGCGGC GGGCTATCTG GCCGAGGCGG TGCCGGACGT GAAATCGGCG
CTGGACGGCG CGCGCGACAT CCTGGTCGAG GAACTGTCCG AGAATGCGGC GCTGCTGGGC
CGGCTGCGCG AATTCATGCA GGCCGAGGCG ATCATCTCGG CCAAGGTGGT GCCGGGCAAG
GAGCAGGTCG GCGCCAAGTT CAGCGACTAT TTCGACCAGT CCGAGAAATG GGCGAGCATC
CCGGCGCATC GCGCGCTGGC GATCCTGCGC GGCGCCAAGG AAGAGGTGCT GACCATCGAG
ATCGCGCCCG AGCCGGAAAC CGGCGCGGCG CGGGCCGAGG GCATCGTCGC CTCGGCGCTG
GGACGGCTGG GCGATCAGCC GGGCGACCGC TGGCTGCGCA AGGTGGCGGG CTGGTGCTGG
CGGGTGCGGC TGTCGAACAC CATGTATATC GACCTGCTGA CCGAGCTGCG CGCGCGCGCC
CATGCCGAGG CGATCCGGGT TTTCGCCCGC AATCTCAAGG ATCTGCTGCT GGCCTCGCCC
GCCGGCCCGC GCCCGACCAT CGGGCTGGAC CCCGGCATCC GCACCGGGGT CAAGCTGGCG
GCGGTGGACG GCACCGGCAA GCTGGTCGAG ACGGCGACGC TGTATCCCTT TCCGCCGAGA
TCCGACCTGC GCGGGGCCGA GGCCGCGCTG GCCGCCGCCA TCGTCAAGCA CGGGATCGAG
CTGATCGCCA TCGGCAACGG CACCGCCAGC CGCGAGACCG AGCGCTTCGT GGCCGAGGTG
CTCAAGCGCC TGCCCGAAGG CGTGAAGCAG CCCGTGAAAG TAATCGTCAG CGAGGCCGGC
GCCTCGGTCT ATTCCGCCTC GGAACTGGCG GCCAAGGAGT TTCCCGGCCT CGACGTGTCC
TTGCGCGGCG CGGTCTCCAT CGCCCGGCGC CTGCAGGACC CGCTGGCCGA ACTGGTCAAG
GTGCCGCCCG AATCGATCGG CGTCGGCCAA TACCAGCACG ACGTGGACCA GCGCCAACTG
GCCAGGACGC TGGAGGCGGT GGTCGAGGAC GCGGTGAACG CGGTGGGGGT GGACCTGAAC
ACCGCCTCGG CGCCCTTGCT GGCGCATGTC GCGGGGCTGG GTCCGTCGCT GGCGCAGAAC
ATCGTTGCCT GGCGCGACGA GAACGGCGCC TTCCCGTCGC GCGCTGCGCT GAAGAAGGTC
GGCGGCCTCG GCCCGCGCGC CTTCGAGCAA TGCGCGGGCT TCCTGCGCAT CCGCGATGGC
AAGGAGCCGC TGGACGCCTC CTCGGTCCAC CCCGAGGCTT ACGGCGTCGC GCGCAGGATC
GTCGCCGCCT GCGGCCGCGA CATCCGCCAG ATCATGGGCG ACGGCGCGGC GCTGAAGGGC
ATCCGCGCGG AAGCCTTCGT CGATGAGCAT TTCGGCCTGC CCACCATCCG CGACATCCTG
TCCGAACTGG AAAAGCCCGG CCGCGACCCG CGCCCGAGCT TCGTCACGGC AAGCTTCGCC
GAGGGGGTCG AAGCGATCGG CGATCTGCGT CCCGGCATGG CGCTGGAGGG CACGGTGACG
AATGTCGCGG CCTTCGGCGC CTTCGTCGAT ATCGGCGTGC ATCAGGACGG GCTGGTGCAT
ATCAGCCAGC TTGCCGACCG TTTCGTCAAG GACCCGAACG AGGTGGTGAA GGTCGGCGAC
GTGGTCAAGG TGCGGGTGAC CGAGGTGGAC GTGGCGCGCA AGCGCATCGG CCTGACCATG
CGCAAGGACG GCGGCGCCTC GGCCCGCGAC GCGCAGAAAG AGCGCGGCCC CAAGGCCCAG
CCGGCACGCG GCCCGAAATC CGCCGCACCC GCTGGAAAGG AGCAGCCCGG CGCATTGGGC
GCGGCGCTGC TGAACGCGCT GCGAAAGAAC TGA
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| Protein sequence | MPPVDATDRI ARTIAAEISA SPTQVAAASA LLDGGATVPF VARYRKEVTG GLDDTQLRTL
SERLAYLREL EARRVSILES IKGQGKLTDE LARAIAGAGT KATLEDIYLP FKPKRRTKAM
IARENGLEPL LRAIQENRAA EPEALAAGYL AEAVPDVKSA LDGARDILVE ELSENAALLG
RLREFMQAEA IISAKVVPGK EQVGAKFSDY FDQSEKWASI PAHRALAILR GAKEEVLTIE
IAPEPETGAA RAEGIVASAL GRLGDQPGDR WLRKVAGWCW RVRLSNTMYI DLLTELRARA
HAEAIRVFAR NLKDLLLASP AGPRPTIGLD PGIRTGVKLA AVDGTGKLVE TATLYPFPPR
SDLRGAEAAL AAAIVKHGIE LIAIGNGTAS RETERFVAEV LKRLPEGVKQ PVKVIVSEAG
ASVYSASELA AKEFPGLDVS LRGAVSIARR LQDPLAELVK VPPESIGVGQ YQHDVDQRQL
ARTLEAVVED AVNAVGVDLN TASAPLLAHV AGLGPSLAQN IVAWRDENGA FPSRAALKKV
GGLGPRAFEQ CAGFLRIRDG KEPLDASSVH PEAYGVARRI VAACGRDIRQ IMGDGAALKG
IRAEAFVDEH FGLPTIRDIL SELEKPGRDP RPSFVTASFA EGVEAIGDLR PGMALEGTVT
NVAAFGAFVD IGVHQDGLVH ISQLADRFVK DPNEVVKVGD VVKVRVTEVD VARKRIGLTM
RKDGGASARD AQKERGPKAQ PARGPKSAAP AGKEQPGALG AALLNALRKN
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