Gene Pden_4454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4454 
Symbol 
ID4583004 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1665613 
End bp1666785 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content72% 
IMG OID639771761 
Productputative nitrate transport protein 
Protein accessionYP_918214 
Protein GI119387159 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTTGA CGCCCCTGCG CCTGGGCTAT GTGCCGCTGA TCGACGCCGC GCCGCTGATC 
GTGGCGCGCG AGCTGGGCTT TGCCGCCGAG GAGGGGCTGG AGTTCCAGCT TCTGCGCCTG
GGCGCCTGGG CGCAGGCCCG CGACATGCTG GGTGCCGGGC TGATCGAGGC GGCGCATATG
CTGGTGCCGA TGCCGGTCGC GCAGGCGCTG GGGCTTGGCC CGGCGCTGCC CGACCTGGAC
CTGGTGATGT TCCTGTCCCA GGGCGGGCAG GCGGTTGCGG TCAGCGCCGC GCTGGCCGCA
AGGATGCGCG AACAGGGCCA TGATTTCGAC TTTCGCGATG CCCGCAAGGC CGCCCGCGCG
CTGCATCGCG CCGCTCCTGA CCGGCTGCGC GTCGGCGTGC CGTTCCATTT CTCGACGCAG
CTGGAACTGA TCCGCCACTG GCTCGGTGCC TGCGGCCCCG GCCCGGCGCT GGAGGTCGTG
ACCGTGCCGC CGCCGCTGAT GGCCGAATCC ATGGCCGCGG GCGAGGTCGA TGCCTTCTGC
GTCGGCGAGC CCTGGGCATC GAGCGCGGTG GACCGGGGCC TTGCCGCGCT GCTCTTGCCC
GGCACGGCGA TCTGGGCCTC GCCGCCGGAA AAGGGGCTGG TGCTGCGCCG CGACTTCACC
GAAGGCCAGC CGCAGGTGAC GGGTGCGCTG ATGCGGGCCG TCTGGCGTGC CGGGCGCTGG
CTGGACGAGC CCGAGAACCG CGATACCGCC GCCGAGATCC TGTCGCGGCG CGAATATCTG
GACCTGCCGG CGGAACTGGC CGAGCGCGGC TTGACCGGGC GGTTGCAGGT CACGCCCTCG
GGCGAGATCC GCCATGTGCC GGACTTCATC GCCTTCCACG CCGGCGCGGC GAATTTTCCC
TGGAAAAGCC TGGCCGCATT CTTTGCGCAG CGCATCGCCC TGCGCCACGG GCTGGAACCG
GGACCGGCGA TGGAAAAGGC GATGGCGCAT TTCCGCACCG ATCTTTACCG CCAGCACCTG
CGTGCGGCGG GGGCGGCCTT GCCCGGCGCC TCGGCCCGGC TGGAGGGCGC ACTGGCGCAG
GACCGCGAGG TCGCGGCCGA AAAGGGCCAG ATGATTCTGC GCGCCGATGC CTTCTTCGAC
GGCACCATCT TCGAACCACC CTTCGCCGGC TGA
 
Protein sequence
MPLTPLRLGY VPLIDAAPLI VARELGFAAE EGLEFQLLRL GAWAQARDML GAGLIEAAHM 
LVPMPVAQAL GLGPALPDLD LVMFLSQGGQ AVAVSAALAA RMREQGHDFD FRDARKAARA
LHRAAPDRLR VGVPFHFSTQ LELIRHWLGA CGPGPALEVV TVPPPLMAES MAAGEVDAFC
VGEPWASSAV DRGLAALLLP GTAIWASPPE KGLVLRRDFT EGQPQVTGAL MRAVWRAGRW
LDEPENRDTA AEILSRREYL DLPAELAERG LTGRLQVTPS GEIRHVPDFI AFHAGAANFP
WKSLAAFFAQ RIALRHGLEP GPAMEKAMAH FRTDLYRQHL RAAGAALPGA SARLEGALAQ
DREVAAEKGQ MILRADAFFD GTIFEPPFAG