Gene Pden_4452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4452 
Symbol 
ID4583002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1661672 
End bp1664104 
Gene Length2433 bp 
Protein Length810 aa 
Translation table11 
GC content68% 
IMG OID639771759 
Productnitrite reductase (NAD(P)H), large subunit 
Protein accessionYP_918212 
Protein GI119387157 
COG category[C] Energy production and conversion 
COG ID[COG1251] NAD(P)H-nitrite reductase 
TIGRFAM ID[TIGR02374] nitrite reductase [NAD(P)H], large subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAC TTGTCGTCAT CGGCGCCGGC ATGGCCTCGG GCCGCCTGCT GGAGCAGCTT 
TTCGAGGCCG CGCCCGGCGA ATGGCATGTC ACCCTGTTCA ACGCCGAGCC GCGCGGCAAT
TACAACCGGC TGATGCTGTC GCCGGTCCTG TCGGGCGAAA AGACCTATGA GCAGATCGTC
ACCCACGACG CGGACTGGTA TGCCGCGCAT GGCGTCGATT GCCGCTTCGG CGAGCCGGTG
GTCAGGATCG ACCGCGCCAA TCGCGCCGTC TATTCCAACG CGGGCGGCGC ACCCTATGAC
GCGCTGGTCA TCGCCACCGG CTCGGCGCCC TTCATCATTC CGGTTCCGGG CCGCGACCTG
CCGGGCGTGG TGACCTATCG CGACCTGGAA GACACCAACG CGATGATCGA GGCCGGCGTG
GCCGGCAAGG ATGCCGTGGT GATCGGCGGT GGGCTTCTGG GTCTTGAGGC CGCGGCCGGC
ATGGCGGCGC GCGGCGCCCG CGTCACCGTC GTCCACCTGA TGGGCCACCT GATGGAGCGG
CAGCTGGACC CCGCCGCCGG CTACCTGCTG CAACGCGACC TGGAGCGGCG CGGCATCAAG
GTGCATTGCA AGGGCGCGAC CAAGGCGATC CTGGGTCATG GCCAAGCCGA GGCGGTGCTG
CTGGAGGACG GCACCGTCCA CCCTGCCGAC CTGGTCTGCA TGGCGGTGGG CATCCGCCCC
GAGGTGCGGC TGGCCAATGA CGCGCATCTG GAGGTCGAGC GCGGCATCGT CGTCGATGAC
GCCCTGCGCA CCAGCGATCC GCATATCTTC GCGCTTGGCG AATGCGTCGA GCATCGGGGC
CAGGTCTTCG GCCTTGTCGC GCCGCTTTAC GACCAGGCCA AGGTGCTGGC CCGGACCCTG
CTGGGCGAGG AGGCTGCGTT CCGCCCGGTG CAGACCGCGA CCAAGCTGAA GGTGACGGGC
TGCGACCTGT TCAGCGCCGG CGATTTCGCC GAGGGCGAGG GGCGCGAGGA CATCGTGTTC
CGCGACCCCG GCCGCGGCAT CTACAAGCGG CTGGTGCTGG AAAACGACCG CATCGTCGGC
GTGGTCATGT ATGGCGACAC CGCCGACGGC AACTGGTTCT ATGGGCTGAT GAAGGACGAA
ACCGATGTCG GCGAGATGCG CGACACGCTG ATCTTCGGCC CGGCTTTCCA GGGGGGGGCC
AAGCTGGACC CTATGGCGGC CGTTGCAGCC TTGCCGCCTG AGGCGGAGAT CTGCGGCTGC
AACGGCGTCT GCAAGGGAGC GATCACCGAC GCGGTGCTGA ATGGCGCCAC CACGCTGGAG
GCGGTGCGCG CCTGCACCAA GGCCAGCGGC TCCTGCGGCA CCTGCACCGG GCTGGTCGAG
CAGGTGATGA AGCTGACGCT GGGCGACGGC TTCGTCGCGC CCGCGCCCGC CGGCATGTGC
AAATGCACCG ATCACAGCCA CGAGGACGTG CGGCGGCTGA TCCGCTCCAT GGGGCTGAAG
TCGATCCCGG CCGTCATGCA GGAACTGGGC TGGAAAACGG TCGGCGGCTG CCATTCCTGC
CGCCCGGCGC TGAACTATTA CCTGCTGGCC GAATACCCGC TGGACTATCG CGACGACCGC
CAGTCGCGTT TCGTGAACGA AAGGAACCAC GCCAATATCC AGAAGGACGG CACCTATTCG
GTGGTGCCGC GCATGTGGGG CGGCGTCACC ACGCCCTCCG AGTTGCGCGC CATCGCCGAC
GCAGCCGAGA AATATGCCGT GCCGATGGTC AAGGTCACCG GCGGCCAGCG CATCGACCTG
CTGGGCGTGA AGAAAGAGGA CCTGCCGCAT ATGTGGGCCG ACCTGAACGC CGCCGGGCTG
GTCTCGGGCC ACGCCTATTC CAAGGGGTTG CGCACGGTGA AGACCTGCGT CGGCAGCGAG
TTCTGCCGCT TCGGCACCCA GGATTCGACC GGGCTGGGCA TCCGGCTGGA AAAGCTGCTT
TGGGGTTCGT GGACGCCGCA CAAGGTCAAG CTGGGCGTCT CGGGCTGCCC GCGCAACTGC
GCCGAGGCGA CCTGCAAGGA CGTGGGCGTG GTCTGCGTCG ACAGCGGCTA CCAGATCAGC
GTCGCCGGCG CCGCCGGGAT GGAGGTGAAG GAGACCGAGC CCCTGGCCAC GACCCCGTCC
GAGGACGAGG CGGTCGAGAT CATCACCGCC TTCGTCCAGC TTTACCGCGA ACATGCGCGC
TATCTGGACC GGCCCTATAA ATGGGTGGCC AAGGTCGGGC TCGACTGGGT GCGCGAGCAG
ATCGAGGACG TGCCCACCCG CCGCGCGCTG GTCGAGCGGT TCGAGATCAG CCAGTCGGTC
TATCGCCGCG ACCCCTGGGC AGAACACTCC ACCACCACCG AGACGCCCAA ATGGGCACCC
CTTGCCGATC TGACGCTGGA GGCCGCGGAA TGA
 
Protein sequence
MKKLVVIGAG MASGRLLEQL FEAAPGEWHV TLFNAEPRGN YNRLMLSPVL SGEKTYEQIV 
THDADWYAAH GVDCRFGEPV VRIDRANRAV YSNAGGAPYD ALVIATGSAP FIIPVPGRDL
PGVVTYRDLE DTNAMIEAGV AGKDAVVIGG GLLGLEAAAG MAARGARVTV VHLMGHLMER
QLDPAAGYLL QRDLERRGIK VHCKGATKAI LGHGQAEAVL LEDGTVHPAD LVCMAVGIRP
EVRLANDAHL EVERGIVVDD ALRTSDPHIF ALGECVEHRG QVFGLVAPLY DQAKVLARTL
LGEEAAFRPV QTATKLKVTG CDLFSAGDFA EGEGREDIVF RDPGRGIYKR LVLENDRIVG
VVMYGDTADG NWFYGLMKDE TDVGEMRDTL IFGPAFQGGA KLDPMAAVAA LPPEAEICGC
NGVCKGAITD AVLNGATTLE AVRACTKASG SCGTCTGLVE QVMKLTLGDG FVAPAPAGMC
KCTDHSHEDV RRLIRSMGLK SIPAVMQELG WKTVGGCHSC RPALNYYLLA EYPLDYRDDR
QSRFVNERNH ANIQKDGTYS VVPRMWGGVT TPSELRAIAD AAEKYAVPMV KVTGGQRIDL
LGVKKEDLPH MWADLNAAGL VSGHAYSKGL RTVKTCVGSE FCRFGTQDST GLGIRLEKLL
WGSWTPHKVK LGVSGCPRNC AEATCKDVGV VCVDSGYQIS VAGAAGMEVK ETEPLATTPS
EDEAVEIITA FVQLYREHAR YLDRPYKWVA KVGLDWVREQ IEDVPTRRAL VERFEISQSV
YRRDPWAEHS TTTETPKWAP LADLTLEAAE