Gene Pden_4451 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4451 
Symbol 
ID4583001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1661340 
End bp1661675 
Gene Length336 bp 
Protein Length111 aa 
Translation table11 
GC content70% 
IMG OID639771758 
Productnitrite reductase (NAD(P)H), small subunit 
Protein accessionYP_918211 
Protein GI119387156 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 
TIGRFAM ID[TIGR02378] nitrite reductase [NAD(P)H], small subunit 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.468725 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTTT TCATCGATAT CGGAGCCCTG GAGGACATTC CCCGGCAGGG CGCGCGCGTG 
ATCCGCACCG CGCAGGGCTG CGTCGCGGTG TTCCGCACCA TGGACGACCG GGTCTTTGCG
CTGGACGACC GTTGCCCGCA CAAGGGCGGC CCGCTGTCCG AGGGCATCGT GCATGGCGAT
CGCGTGACCT GCCCGCTGCA CAACTGGGTG TTCGACATGA ACTCGGGCAC CGCGCAGGGG
GCCGACGAGG GCGCGGTCCG CACCTGGCCC GTGCGCGTCG AACAGGGCCG CATCCTGATC
AGCGCCGAAC TCGTCTCGCG CCCCCGCGCC GCCTGA
 
Protein sequence
MTVFIDIGAL EDIPRQGARV IRTAQGCVAV FRTMDDRVFA LDDRCPHKGG PLSEGIVHGD 
RVTCPLHNWV FDMNSGTAQG ADEGAVRTWP VRVEQGRILI SAELVSRPRA A