| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4393 |
|---|
| Symbol | glpD |
|---|
| ID | 4582943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1587386 |
|---|
| End bp | 1588969 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639771700 |
|---|
| Product | glycerol-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_918153 |
|---|
| Protein GI | 119387098 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.124287 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGCAC CAGCGCGGCC CGAGGCCGAC CTTTTCATCA TCGGCGGTGG AATCAACGGC
TGCGGCATCG CGCGGGACGC GACGGGGCGT GGGCTTTCCG TCACGCTGGC CGAGATGGGA
GATCTGGCGC AGGCGACCTC GTCGGCCTCG ACCAAGCTGT TCCATGGCGG GCTGCGCTAT
CTGGAATTCT TCGAGTTCCG GCTGGTGCGC GAGGCGCTGG AGGAACGCGA GACGTTGCTG
GCCGCCATGC CGCATATCTC GTGGCCGATG CGCTTCGTGC TGCCCTATTC GCCGCAGATG
CGGTTCGAAA GCGACACGCC GACCTCGCGC ATCCTGTCCC TGGCCATGCC CTGGCTGCGA
GGCCGCCGCC CGGCCTGGCT GATCCGGCTG GGGCTGTTCC TTTACGACAA CCTGGGCGGG
CGCAGGATCC TGCCGGGCAC CAAGCGTCTG GACCTGTCCC GCGATCCGCT GGGCAAGCCG
CTGAAGCCGG GCTTTCGCCT GGGCTGGGAA TATTCCGACT GCTGGGTGCA GGATTCGCGG
CTGGTGGTGC TGAATGCCCG CGACGCCGAG GCGCGCGGCG CCACCATCCT GACCCGCACC
CGCGTCACCC GTGCCGAGCG CGCGGACGGG CTGTGGCGCA TCACCACCGA AGGGCCGGAC
GGAACGCGCA CCCATCATGC CCGCGCGCTG GTCAATGCTG GCGGGCCGTG GGTCGAGGAC
GTGATCCGCA CCGTCGCCCA TATCCCCTCG ACCGAGGGCG TGCGGCTGGT GCGCGGCAGC
CATATCGTCG TGCCGCGGCT TTACGATCAC GACCGCTGCT ATTTCTTCCA GGGCGAGGAC
GGGCGGATCA TCTTCTCGAT CCCGTTCGAG GAGGACTTCA CCCTGATCGG CACCACCGAC
ATGGATCATC AGGGATCGCC GGACGAAGCG CGCTGCTCGG AGGCCGAGCG CGACTATCTC
TGCGCCTTCG CCAGCCGGTA TTTCGCGCGG CCCGTGACGC CCGAACAGGT GGTCTGGACC
TATTCCGGGG TGCGGCCGCT TTACGACGAC GGCGCGAAAT CGGCCACGGC GGCGACGCGG
GACTACGTGC TCAGCCTGCA TGACGAGGGC GCGCCGCTGC TCAACGTCTT CGGCGGCAAG
ATCACCACCT ATCGCCGGCT GGCGGAAAGC GCGCTGGCGA AGCTTGCGCC CTTCTTTCCG
CAGGCGGGCG GTGACTGGAC GGCCCGGGTG CCGCTGCCCG GGGGCGACTT CCCGGTGGAC
GGGGTCGAGG CCCTGATCGC GCAATTGCAG GCCAGCCATC CGTTCCTGTC GCCGCGCCTT
GCCCGCCGGC TGGTGCGCAC CTACGGCACC GAGGCGTTCC TGCTGCTGGA CGGTGCCGGA
AGCATGGCCG ATCTGGGCCG CGACTTCGGC GCCGGGCTGA CCGAGGCCGA GGTTAACTGG
CTGATCCGCA ACGAATTCGC CCACAGCGCC CAGGACATCC TGTGGCGGCG CACCAAGCTG
GGCTTGCACA TGAACGAGGC GCAGTGCCGC GAGTTGGGGG CGTTCGTCGC GACGCGGCAT
GCCGCCTATT CGGCGGCGGA GTAA
|
|---|
| Protein sequence | MSAPARPEAD LFIIGGGING CGIARDATGR GLSVTLAEMG DLAQATSSAS TKLFHGGLRY
LEFFEFRLVR EALEERETLL AAMPHISWPM RFVLPYSPQM RFESDTPTSR ILSLAMPWLR
GRRPAWLIRL GLFLYDNLGG RRILPGTKRL DLSRDPLGKP LKPGFRLGWE YSDCWVQDSR
LVVLNARDAE ARGATILTRT RVTRAERADG LWRITTEGPD GTRTHHARAL VNAGGPWVED
VIRTVAHIPS TEGVRLVRGS HIVVPRLYDH DRCYFFQGED GRIIFSIPFE EDFTLIGTTD
MDHQGSPDEA RCSEAERDYL CAFASRYFAR PVTPEQVVWT YSGVRPLYDD GAKSATAATR
DYVLSLHDEG APLLNVFGGK ITTYRRLAES ALAKLAPFFP QAGGDWTARV PLPGGDFPVD
GVEALIAQLQ ASHPFLSPRL ARRLVRTYGT EAFLLLDGAG SMADLGRDFG AGLTEAEVNW
LIRNEFAHSA QDILWRRTKL GLHMNEAQCR ELGAFVATRH AAYSAAE
|
|---|
| |