| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4380 |
|---|
| Symbol | |
|---|
| ID | 4582930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 1571526 |
|---|
| End bp | 1572773 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639771687 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_918140 |
|---|
| Protein GI | 119387085 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.207674 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCGAAAA ACGGTCACAG CGGGGTCATG TCCGATGCAA CCGTTCCGAC CATGCGCCCC
GCTTTTGCCC CCTGGCTGTC CCGCAGCAAC GACGTGACCT CGGTCTTTCT GGCGGCGGGA
CAGGTACCCG ATCTGGTCAA CCTTGCCGGG GGCCTGCCCG AACCCTCGGT CTGGCCGGTC
GAGGAACTGG CCGGGCTGGC CGCCGAGGCG ATCCGCAACC ACCCGGACGA GACGCTGGGC
TATGGCCCGA TCCCCGGCCT GCCGGCGCTG CGCGACCTGA TCGCCGCGCG CTTCTCGGCC
GGCGCGCTGC GGCTGTCGCG CGAGAACGTG CTGATCACCA CCGGCGGCAT GCAGGCGCTG
GAACTGATGG GCAAGGTGCT GTTGCAGCCG GGCGGGCTGG TCGCGGCGCA AAGCCCGGCC
TATCTGGGCG CGCTGGACGC CTGGATGCCG CATGCGCCGC GCTATCGCGC CATGCGGATC
GAGGCGAACG ATTTCGACCC CCACGCCGCG CTGGCCGGGG CGCAATTCGC CTATACGGTG
CCGAATTTCT CGAACCCCAG CGGCCGGCTG GTGGCCCTGC CCGAGCGGCA GGCGCTGGTC
GCCGCCGCCC ATGCCACCGG CACCTGGCTG ATCGAGGACG ACCCATACGG CGCGCTTTAC
TATGAAGGCG AGCCCCTGCC CCGGCTGCTC GATCTGTCGG CGGCCGAGCG GCCCGGCCCC
TATGACGGGC CGGTGGTCTA TATGGGCTCG CTCTCCAAGG AACTGGCGCC GGGGCTGCGC
ATCGGCTGGG TGATCGCCGC GCCCGAGATG ATCGCGGCGC TGGCCACCGC CAAGCAGGGC
TCGGACATGT GTTCCAGCGG GCTGTCGCAG ATGCTGGCGC TGCGGGCGCT GCAGGCGGGC
ATGACCGACC GCATCCGCCC CGAGGTGCTG TCGATCTATC GCGCCCGGCG CGACGCGCTT
TGCGCCGCGA TGCGACAGCA CCTGTCCGCG GATCTGGACT GGCAGGTGCC GGTCGGCGGC
ATGTTCGTCT GGGCCACGGC GCGCGATCCG CGGCTGGACA CCGACCGGCT GCTGCATCAT
GCGATGGCGC AGGGGGTCTG CATTTCGCCC TCCAGCGTCT TCGACCCCGA GGGGCTGGAC
CGTCGTTCGC TGCGGATCAA CTTTACCCTG AACCCGCCCG AGCGGCTGGA GGAGGGCTGC
CGCCGCCTGG CCCGCGCCAT CCGCGCCGCG CTGGCCGAGG TCGGTTGA
|
|---|
| Protein sequence | MAKNGHSGVM SDATVPTMRP AFAPWLSRSN DVTSVFLAAG QVPDLVNLAG GLPEPSVWPV
EELAGLAAEA IRNHPDETLG YGPIPGLPAL RDLIAARFSA GALRLSRENV LITTGGMQAL
ELMGKVLLQP GGLVAAQSPA YLGALDAWMP HAPRYRAMRI EANDFDPHAA LAGAQFAYTV
PNFSNPSGRL VALPERQALV AAAHATGTWL IEDDPYGALY YEGEPLPRLL DLSAAERPGP
YDGPVVYMGS LSKELAPGLR IGWVIAAPEM IAALATAKQG SDMCSSGLSQ MLALRALQAG
MTDRIRPEVL SIYRARRDAL CAAMRQHLSA DLDWQVPVGG MFVWATARDP RLDTDRLLHH
AMAQGVCISP SSVFDPEGLD RRSLRINFTL NPPERLEEGC RRLARAIRAA LAEVG
|
|---|
| |