| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4366 |
|---|
| Symbol | |
|---|
| ID | 4582916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1555817 |
|---|
| End bp | 1557880 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639771673 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_918126 |
|---|
| Protein GI | 119387071 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGCA TCCCCTTTCT GGCGAAGAAG ATGAACGAAC ATGATATTGC CGCGCCTCTG
GCTGCGGCGC TGGCGGCCAA GGGCTATGCC AGCCTGACCT CGGTGCAGGA AGCGGCGCTC
GCGCCCGAAG CACGGGGCCG CGACGTGCTG GTCTCGGCGC AGACCGGCTC GGGCAAGACC
GTGGCCTTCG GCCTGGCCAT GGCCGGCGAC ATCCTCGATG GAGAGACCCT GCCCGAGGCG
GGACAGCCGC TGGCACTGGC CATCGCGCCG ACGCGCGAAC TGGCCTTGCA GGTGGCGCGC
GAACTGGGCT GGCTCTACGA ACAGGCGGGC GCGCGCATCG CCACCTGCGT CGGCGGCATG
GATTACCGGA CCGAGCGCCG GGCGCTGGAG CGCGGCGCCC ATATCGTCGT CGGCACTCCC
GGCCGGCTGC GCGACCATAT CGAGCGCGGC TCGCTGGACC TGACCGCCTT GCGCGCCTGC
GTGCTGGACG AGGCGGACGA GATGCTGGAC CTGGGCTTTC GCGAGGATCT GGAGTTCATC
CTGGGCTCGG CACCGGCCGA ACGCCGCACG CTGCTGTTCT CGGCCACCGT GCCCCCGGCC
ATCGAGGCGC TGGCCCGCGA CTTCCAACGC GACGCCCTGC GCATCCAGGC GATGGGCGAG
GCACGCCAGC ACGGTGACAT CGAATATCGC GCCATGTCGG TGACCACCCG CGACCGCGAG
CACGCCATCT TCAACACCCT GCGCTATTAC GAGGCCAGCC GCGCCATCAT CTTCTGCAAG
ACCCGCGCCA ACGTGAACCA CCTGCTGGCG CGCATGGGCA ATCGCGGCTT CAAGGTCGTG
GCGCTGTCGG GCGAACTCAG CCAGCAAGAG CGCAGCCATG CCCTGCAAGC CCTGCGCGAC
GGGCGTGCGC GGGTCTGCAT CGCCACCGAC GTGGCGGCGC GCGGCATCGA CCTGCCGGGG
CTGGAACTGG TGATCCACGC CGACCTGCCG ACCAATCCCG ATACGCTTTT GCACCGTTCG
GGCCGCACCG GCCGGGCCGG GGCCAAGGGC ACCTCGGTGC TGATCGTCCC CTCCTCGGAA
TACAAGCGGG CGCAGCGGCT GCTCCAGCGC GCCAAGCTGG TCGCGGAATG GGGCAAGGCG
CCCTCGGCCG ACGAGGTGCA GGCCCGCGAC GACGCACGCA TGCTGGACCA TCCCGCCCTG
GCCGAAGCGC CGGGCGACGA GGCGGGACTG GCCGCCGCGC TGCTGGACCG CTTCGGAGCC
GAGCGGGTCG CCTCGGCCTT CGTGCGGCTG TGGCGCGAGG GGCGCCCGGC GCCCGAGGAA
CTGTCGGAAA GCGCGGCCCC CGCGCCTTCG GCGCCGCGCG AGCGGGGCGA GTTCGGCCCG
GCGGTCTGGT TCCTGCTTTC GGTCGGCCAT TCCGGCCGCG CCGAGGCGCG CTGGCTTCTG
CCCAAGATCT GCGAGGCGGG CGGCATCACC CGCGACGCCA TCGGCGCGAT CCGGGTCAAG
ACCGACCAGA CCTTCGTGCA GATCGCGGCA CCCGTCGCGC CGAATTTCGG CGAGCGGATC
GAATTGGAGC CCGGCCTGAC CATGCGCCGG ATCGAGGGCG AGCCCGTCTT CGACGCCGCA
CCCGTGCGTG AGAAAAAGCC GCATCGCGGC CCGGCCCCGG TCGCGGCGCG TCCCGAGCCG
CTGGAGCCCC GGACCAAGCC GAAGCCCAAG CCGGCCCGGC GCCCGGCGCT GCTGGACCCC
GACGAGGTGA AGCCGCGCCC CGCGCCCGAA GCCGCAGCCG ACCGGGTGCC CGAACCCGAG
GCGGCCCCGC GCAAGGCACG CTGGAGCGCC GAGAAGAAGC TGGCGCAGAA GGCCGCGCCG
AAAGCCGGTC CCCGTGCCGC GGGCTTCAAG TCGCATGGCG CCGCGCCCCG CGACGACCGC
CCGGCCCGAG GCGAGGGCGC CGAGGCGCGT CCTAAGCGTG CCGCCGGCTT CAAGTCCCAC
AAGCCCGCGG GCGGCTGGCA GGGCAAGGCG GGCGACAAGC CCTTCCGCAG CGGAGCAAAG
CCCGGCAAGC CGGGCAAGCG CTGA
|
|---|
| Protein sequence | MPRIPFLAKK MNEHDIAAPL AAALAAKGYA SLTSVQEAAL APEARGRDVL VSAQTGSGKT
VAFGLAMAGD ILDGETLPEA GQPLALAIAP TRELALQVAR ELGWLYEQAG ARIATCVGGM
DYRTERRALE RGAHIVVGTP GRLRDHIERG SLDLTALRAC VLDEADEMLD LGFREDLEFI
LGSAPAERRT LLFSATVPPA IEALARDFQR DALRIQAMGE ARQHGDIEYR AMSVTTRDRE
HAIFNTLRYY EASRAIIFCK TRANVNHLLA RMGNRGFKVV ALSGELSQQE RSHALQALRD
GRARVCIATD VAARGIDLPG LELVIHADLP TNPDTLLHRS GRTGRAGAKG TSVLIVPSSE
YKRAQRLLQR AKLVAEWGKA PSADEVQARD DARMLDHPAL AEAPGDEAGL AAALLDRFGA
ERVASAFVRL WREGRPAPEE LSESAAPAPS APRERGEFGP AVWFLLSVGH SGRAEARWLL
PKICEAGGIT RDAIGAIRVK TDQTFVQIAA PVAPNFGERI ELEPGLTMRR IEGEPVFDAA
PVREKKPHRG PAPVAARPEP LEPRTKPKPK PARRPALLDP DEVKPRPAPE AAADRVPEPE
AAPRKARWSA EKKLAQKAAP KAGPRAAGFK SHGAAPRDDR PARGEGAEAR PKRAAGFKSH
KPAGGWQGKA GDKPFRSGAK PGKPGKR
|
|---|
| |