| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4348 |
|---|
| Symbol | |
|---|
| ID | 4582898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 1533474 |
|---|
| End bp | 1535159 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639771655 |
|---|
| Product | integral membrane sensor hybrid histidine kinase |
|---|
| Protein accession | YP_918108 |
|---|
| Protein GI | 119387053 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.619101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGATGC TGACGGCTGC ACGCCTGCGC CGCGCCATAT CCGGCACCCG CCGGCCCGAC
AGCAGCTACG ACGCCGAGGC CGGGCAATCG CTGGTCCGGG TGGTGCTGAC CGTCGTGGTC
GCGGCCTATG CCATGATCGG CAACCTGCTG GAACTGGTGG ACGAAAGCGC CGACCTGGTC
TTTCAGATCT ACATGCCGGT CTTCATGACC GTCACCTGCC TGATGTTCGC CGCGATCCGC
CTGTGGCCCG GCGTCTATCA CTGGCGCCGG ATCTTCTGCA TGGTGCTGGA CTTCGGTACG
CTGACGCTGC TGATGACGCT GGGCGGGCCG TTCATGGCGC CGATGGCCTC GCTGCTGCTT
TGGGTGACGG TGGGCTTCGG CATGCGCTAC GGCACGCGCT ATCTGGTCGG CGCGACCGTC
GCGGCGCTGG TCAGCCTGAT GCTGATCGCC GTCTTCAGCC CGTTCTGGCG CGCCCAGCCC
TATCTGGTGG CGACCTTCGT GCTGACCTCG CTGATCGTGC CCTTCTATGC CAACCTGCTG
CTGGCCGACA CGCGCGAGGC CTATCGCTCG GCCGATGCCG CCAACCTGGC CAAGTCGCGC
TTTCTGGCCC AGGCCAGCCA CGACCTGCGC CAGCCGATCC ACGCCATCAG CCTGTTCACC
AATTGCCTGC GCGAGGCGGG GCTGGCGCCG TCCGAACGGC AGATGGTCGA GAATATCGAG
CATTCGCTGC AAAGCGTCCG GCGCATGTTC CGCTCGCTTC TGGACATCGC GACGCTGGAC
AGCGGCGGCG TCGTGCCGCG CATGCAGCCG GTGCCGCTGG GCGCGATCCT GCGCGACGTC
GTCACCCAGC ACCAGGAGGC CGCACGCCGT GCCGGGGTCG AGCTGCGGCT GGTCGAAACC
GGGCTGACGG TGGAAAGCGA TCCGGGCCTG CTGACGGTGA TGCTGCAAAA CCTGGTCTCG
AACGCGGTGA AATACGCGCC CGGCGCGCGG GTGCTGATCG GCTGCCGCAG GCACGGGTCA
GGGGTCGACG TGCTGGTGAT CGACCGCGGC ATCGGCGTCG CGCCCGAGCA CCAGCCGCAT
CTGTTCGAGG AGTTCTATCG CGTCCAGCCG CCCGGCCGCG ATGTCGAGGG CGTGGGGCTG
GGCCTTGCCA TCGTGCAACG CATGGCGCAG CTGATCGGCG CGGGGGTCGA GCTGCGCTCG
ATCCCCGGAC GCGGGACCAC GGTGGCGCTG ACCGGGCTGC GCGCGACCGA ACCGCCGCCC
GCGCCGCCCC ACCCCGACGG CCACCCCGAC GACCGCCCGC GCAGCAGCCC GCCGCAAAGC
CTGCTGCAGG GGCTTCGCGT CCTGCTGATC GAGGACGATC CGGCCGTGCT TCTGTCCACG
CAGATGCTGA TGGAACGCTG GGGCTGCACG GTCCACGCCC ATGAGCAGCC GCCCCGCGAT
GTGCCGCCCT GCGACATGAT CGTCGCCGAT TTCGACCTGA ACGGCCCGCT GACCGGCGGC
GATGCCATCG CCATCGCGCG CGCCGCCCTT GGCGCGCCGA TCCCCGCCAT CGTCATCACC
GCCCATGACG AGGCCCGCGT GCGCGAACGG TTGGGCGAGG CCGGCCTGCC GATCCTGCCC
AAGCCGATGC GGCCGGCCGA GTTGCGCGCG CTGATGCTGT CGCTGCGGCT GGAGCGCGGC
GGCTAA
|
|---|
| Protein sequence | MGMLTAARLR RAISGTRRPD SSYDAEAGQS LVRVVLTVVV AAYAMIGNLL ELVDESADLV
FQIYMPVFMT VTCLMFAAIR LWPGVYHWRR IFCMVLDFGT LTLLMTLGGP FMAPMASLLL
WVTVGFGMRY GTRYLVGATV AALVSLMLIA VFSPFWRAQP YLVATFVLTS LIVPFYANLL
LADTREAYRS ADAANLAKSR FLAQASHDLR QPIHAISLFT NCLREAGLAP SERQMVENIE
HSLQSVRRMF RSLLDIATLD SGGVVPRMQP VPLGAILRDV VTQHQEAARR AGVELRLVET
GLTVESDPGL LTVMLQNLVS NAVKYAPGAR VLIGCRRHGS GVDVLVIDRG IGVAPEHQPH
LFEEFYRVQP PGRDVEGVGL GLAIVQRMAQ LIGAGVELRS IPGRGTTVAL TGLRATEPPP
APPHPDGHPD DRPRSSPPQS LLQGLRVLLI EDDPAVLLST QMLMERWGCT VHAHEQPPRD
VPPCDMIVAD FDLNGPLTGG DAIAIARAAL GAPIPAIVIT AHDEARVRER LGEAGLPILP
KPMRPAELRA LMLSLRLERG G
|
|---|
| |