| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4336 |
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| Symbol | |
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| ID | 4582886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 1516482 |
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| End bp | 1518473 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639771643 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_918096 |
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| Protein GI | 119387041 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.270132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGCG ACCGGACGAC CCGAGACCCG CAGGCGGGCG GACGCCTTTT GCTGGAGCCC
GAGATGAGCG TCGGCTGGCA GGGTGACCGG CCCCGTGCGC CGGCCTCGAA GCCCCTGGGC
ACCGGCCCGA CCATCGACCG GCAGGCCGGA CGCCTTCCCG CCGAGCCGGC CGTGGTGCCC
TCGAAGGACG GCGCGGCCTT TCACAAGCGC GTCTCGGAGC CCGATATCGC CGGGGCGCTG
GGGGCCACGA TCCGCCGGAT CTGGGCCAAT ATCCTGGGCG TGCTGCTGTT CAGCGGCGTG
ACCAACCTGC TGGTGCTGGC GATCCCGGTC TATCTGTTCC AGATCTCGGA CCGGGTGCTG
ACCAGCCGCT CGATCGACAC GCTGGTCATG CTGACGGTGG TGATCGTCGG CGCCGTGCTG
CTGCAGGTGG TCTTCGACGC CATCCGGCGC GGCATGCTTC TGCGCAGTTC GGTCGATATC
TCGGCCCGGC TCGGCTCGCC CATCCTGGCG GCCGCCGCAC GCGCCTCGCT GCAAAGCAAC
GGGCAGGAAT ACCAGACGCT GGGCGACTTG CAGCAGGTGC GCAGCTTTCT GGTGTCGGGA
ACGCTGCTGT CGGTCCTGGA CCTGCCCTTC GCGCCGCTGT TCATCCTGGC GATCTTTCTG
GTCCATCCGC ATCTGGGCCT GATCGTGCTG GCCACGGCGG GGGTGCTTCT GGCCATCGCG
CTGATGAACC AGCGCGCCAC CGCGAAATCC TTTGCCGAGG CGAACCGGCA CCTGAGCCGC
GCGAACCTGC ACCTGGATTC GATGATGCGC AATTCCCAGA TCATCAACGC GCTGGCGATG
ATCCCCGAGG CCGTGACCAT CTGGGGCCGG GATGCCGCCA GCTCGATGGC GGCGCAGGTG
CGGGCGCAGG ACCGCAACAT CATGTTCGCC GGCGCTTCGC GCGGGGTGCG GCTGCTGACG
CAGGTGGGAC TGCTGGGCTG GGGCGCCTAT CTGGCGCTGC GCGGCGAGAT CACCGGGGGC
ATGGTCATCG CCGCCTCGAT CATCGCCGGC CGCGCGCTTG CACCCATCGA GGGCGCCATC
GAGGGCTGGA ACAGCGTGCT TCTGTCGCGC GCCGCCTATG GGCGCATCTC GGCGCTGCTG
AAATCCTCGC CGCTGAACCA GCAGCGCCTG AAACTGCCCC ATCCCGAGGG GCGGCTGGAT
GTCGAGCGGC TGCTCTACGT TCCGAACGGG ACCAAGCGGG TGGTGCTGAA CGCGATCACC
TTTTCGCTGA ACCCCGGCAC GTCGCTGGCC ATCGTCGGCA AGTCCGGCGC CGGCAAGACG
ACGCTGGGCA AGATGCTGGT CGGCTCGATC CTGCCCACCT CGGGCAGCGT GCGGCTGGAC
CTGATGGACC TGCGCAACTG GGACCAGCGC CAGCTGGGCC AGTGCATCGG CTATCTGCCG
CAGGACGTGC AGCTGTTCCC CGGCACCATC AAGGACAACA TCGCCCGGAT GCGGCCCGAC
GCCCGCGACG ACGAGATCTA TCAGGCCGCG GTGCTGGCCG ATGTCCACGA CATGATCGCC
AAGCTGCCCG AGGGCTATGA GACGGTCGTG TCCGCCGACG GATCGCCGCT TTCGGGCGGG
CAGAAGCAGC GCATCGGCCT GGCACGGGCG TTTTTCGGCA GCCCCCGGCT GGTGGTGCTG
GACGAGCCGA ACTCGAACCT GGACACCGCA GGGGACCGTG CGCTGTCGCG GGCGATGGCG
CTGGCCAAGA AGGACGGGAT CACCATGATC GTCGTGACCC AGAAATACCA GCTTCTCCAG
GATGTGGACA ACATCATGCT GCTGGCCGAC GGCCAGATCG CCGCCTTCGG CGCGCGCGAC
CAGATGCTGG AGCGGCTGGC CAACAGAAAG CAGCCCGGCA ACGCGCCGCC CGTCGCGGCG
CAGCCGCCCG CGCCGGGCGG GCAAGCCATG ACACCCCCCG CATCGGAGGC AGGCCATGAC
CAGCAGGAGT GA
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| Protein sequence | MKRDRTTRDP QAGGRLLLEP EMSVGWQGDR PRAPASKPLG TGPTIDRQAG RLPAEPAVVP
SKDGAAFHKR VSEPDIAGAL GATIRRIWAN ILGVLLFSGV TNLLVLAIPV YLFQISDRVL
TSRSIDTLVM LTVVIVGAVL LQVVFDAIRR GMLLRSSVDI SARLGSPILA AAARASLQSN
GQEYQTLGDL QQVRSFLVSG TLLSVLDLPF APLFILAIFL VHPHLGLIVL ATAGVLLAIA
LMNQRATAKS FAEANRHLSR ANLHLDSMMR NSQIINALAM IPEAVTIWGR DAASSMAAQV
RAQDRNIMFA GASRGVRLLT QVGLLGWGAY LALRGEITGG MVIAASIIAG RALAPIEGAI
EGWNSVLLSR AAYGRISALL KSSPLNQQRL KLPHPEGRLD VERLLYVPNG TKRVVLNAIT
FSLNPGTSLA IVGKSGAGKT TLGKMLVGSI LPTSGSVRLD LMDLRNWDQR QLGQCIGYLP
QDVQLFPGTI KDNIARMRPD ARDDEIYQAA VLADVHDMIA KLPEGYETVV SADGSPLSGG
QKQRIGLARA FFGSPRLVVL DEPNSNLDTA GDRALSRAMA LAKKDGITMI VVTQKYQLLQ
DVDNIMLLAD GQIAAFGARD QMLERLANRK QPGNAPPVAA QPPAPGGQAM TPPASEAGHD
QQE
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