| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4274 |
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| Symbol | |
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| ID | 4582824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 1446028 |
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| End bp | 1447527 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639771581 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_918034 |
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| Protein GI | 119386979 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.334325 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGATTC CCCCCGACGC CTTTTTCCTG GACCATGCCG CCGGCCTGCC CCTGCAGGTC
CAGCTGCGGC GCCAGATCAT CGCGTCGGTG ACGGCAGGCC GCTTTCGGCC GGGCGAAAAG
CTGCCATCGA CCCGCGCGCT GGCCCTGCAT TTGGGCGTGG CGCGGGTGAC GGTGGCGCAG
GCCTTCGCCG AGCTCGTCTC GACCGATTAC CTGACCAGCC GCGACCGATC CGGCCATTAC
ATCTCGGACA GCATCGAGCG GCGGCTCGAG GCCGAGCCCC CGGCCCCCGA CGCGCCGCGC
TTCGACTGGG ACAGCCAGCT CGAAGGCCGT TTCGGCCGGG CGCAGCGCCG GGATCGCGAG
CGCGACTGGC GCCGCTTCGC CTATCCCTTC GTCTATGGCC AGGCCGACCC GGCGCTGGTC
GACCATGCCG CCTGGCGCGA CTGCGCCATG CGCGCGCTGG GGCGGCGCGA ATTCGACAGC
CTCACCGGCG ACCTCTACGA CGCCGACGAC CCGGAACTGG TCGACCATAT CGCCCGCCAG
ATCCTGCCCC GGCGCGGCAT CAGCGCCGGG CGGGACGAGA TCCTGCTGAC CATGGGGGCG
CAGAACGCGC TGTGGCTGGT GGCGCAGCTG CTGTTGCGCC CCGGCGCCTC CTGCGCGGTC
GAGGACCCCT CCTATCCCGG CCAGCGCGAG ATCCTGACCG CCAGCCGCGC CCGCATCCTG
CCGGTCCCGG TCGATGCCCG CGGCCTGCCG CCTCACGCCA TCCCGCCCGG CATCTCGGCA
GTCTTCACCA CGGCCAGCCA CCAATGCCCG ACCAATTCCA CCATGCCGCT GGCCCGGCGC
AAGGAATTGC TGGCCCGCGC CCAGGCCCAG GGCTTCGCGG TGGTCGAGGA CGATTACGAA
TTCGAGATGT CCTTCGCCGG CGCACCCTCG CCCGCGCTCA AGGCCATCGA CCGGGCCGGG
GCGGTGATCT ATATCGGCTC GTTCTCGAAA TCGGTCTTTC CGGGCGTGCG GCTGGGCTAT
GTCGTGGCCG ATCCGCGCTT CATCGCCGAG GCGCGGGCGC TGCGCGGCAT GGTGCTGCGC
CATCCGCCCG GCCATATGCA GCGGACGCTG GCGCATTTCC TGTCGCTCGG CCATTACGAC
GCGCAGGCGA ACCGGATGCG CCGCGCCTAT GCGCAGCGGC GCGAGGTGAT GCTGGCCGCC
ATCGCGCATG AGGGGCTGCG GCTTGCCTCG CCCGAGGCGA CCGGCGGTTC CAGCTTCTGG
CTGGCGACGC CCGAGGGGGT GGATTCCGCC GAACTCGCAG CCCTGCTCAA GACGCGCGAC
GTACTGATCG AGCCGGGCGC GGCATTCTTC GCCGCACCTT CGCGGGGCGG CGGTTTTTTC
CGTCTTGCCT ACTCGTCGGT CCCCGCGGAC CGGATTGCTG CAGGGATCGG CCGGATCGGG
GCTGCGATGC GCGAGTTGTC GGCCCATTCT GGAGCTTTTG TGTCTATTTC GTCTGCATAG
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| Protein sequence | MPIPPDAFFL DHAAGLPLQV QLRRQIIASV TAGRFRPGEK LPSTRALALH LGVARVTVAQ
AFAELVSTDY LTSRDRSGHY ISDSIERRLE AEPPAPDAPR FDWDSQLEGR FGRAQRRDRE
RDWRRFAYPF VYGQADPALV DHAAWRDCAM RALGRREFDS LTGDLYDADD PELVDHIARQ
ILPRRGISAG RDEILLTMGA QNALWLVAQL LLRPGASCAV EDPSYPGQRE ILTASRARIL
PVPVDARGLP PHAIPPGISA VFTTASHQCP TNSTMPLARR KELLARAQAQ GFAVVEDDYE
FEMSFAGAPS PALKAIDRAG AVIYIGSFSK SVFPGVRLGY VVADPRFIAE ARALRGMVLR
HPPGHMQRTL AHFLSLGHYD AQANRMRRAY AQRREVMLAA IAHEGLRLAS PEATGGSSFW
LATPEGVDSA ELAALLKTRD VLIEPGAAFF AAPSRGGGFF RLAYSSVPAD RIAAGIGRIG
AAMRELSAHS GAFVSISSA
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