| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4264 |
|---|
| Symbol | |
|---|
| ID | 4582814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1434201 |
|---|
| End bp | 1436009 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639771571 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_918024 |
|---|
| Protein GI | 119386969 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.720199 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCGG AAAGCATCCA GAAGGAGGAC TGGGAACGCT TTCGTGCCTT GGGGAGCGTG
CCCCCAAGCG TTCGAGAAGT CGTGCTCAGA TCCTGGGTTC GGTCAAAGGA GGGCGCGAGG
CTGCATGCGT TGCGGCAGGC GCCGTCATTG GGTCAGGACG AACTGAACAA TCTTCGGTCC
AGAAACACGC GCCTGCGCGA AGCCGCGAAA CTCGCCGTCC GGCGCACCGG CTACATGCTC
GATGACGCGG GCGCCATGCT GCTGCTCTGC GACCAGAAGG GCGTCGTGCT CGAGGCGGCG
GGGGATGCGC GCGTGCTGTC GCGCGGCGCC GAGAACCACC TCCAGCCCGG CGGGCGGTGG
GACGAGGCCG CCATCGGCAC CAATGCGATC GGCACGGCGC TGCATCTGGG CAAGCCGGTC
AGCATCACCG GGGTCGAGCA TTTCTGCGAA GCGATCCACC ACTGGTCCTG CGCCGCGGCA
CCGATCCACG ACCCCGTGAC GGGCAAGATG CTTGGCGTGG TGGATATTTC GGCCCCCGCC
CAGGAACGGA TGCGCCGGGG CGCGGCGCTT TCGGTCAGCC TGGCGCTGCA GATCGAAGAG
GCGCTGCGCG CGCTGGAGTT GCAAGAGCGC GAGGCATTGA TCGGCCATCT GCTTTCCTCC
GGCATGGGCG CGGGTCGCGG GGGCGACATG GCCGTCTTCG ACCGCTATGG CCGGCAGGTC
TGGGCATCGG GCGCCTCCGA ACGGCTCAGC ACCAAGCTCG GGCCGGCGAC CGCCGGTCTG
GCCGAGGCCC CTGCGTTCGA GGGCGATCCG CACCTGCTGG CCGAGCGGTT CAGCGCCGCC
TTGCCCGAAG CGGGCGTCGA TCTGATCCTC AGCCGTGGCG AGGCGCTGGG GCTGGTCGTC
AGCTTCCCGA TCAGGCGCCG CGGCGAACGC AAGGACCGCA TCGACCTGCC GGCCATTGCC
GGCATAGGGT CGATGATGGC GCCGATCTGC GACGAGGCCG CGAAGCTTGT CGAAAGCGGC
GTCCCCCTGG TGATCAAGGG GCAGGCGGGC AGCGGCAAGG AAACCCTGGC ACGGGCGCTG
CACGAGGCCG GCCCGCAGGC CCGGATGCCG TTGGAACTGG TGGATTGCAG CCTGCTGGAG
CCCGCGATGC TGCGCGGCGC GCCGGGCGGC GAATGGCTGG CGCGGCTGTC CGACGGCGGC
GGCACGCTGA TTCTGGACGA GCCGGTGGAA ACGCCCCTGC CGGTCCAGGT CGCGCTGGCG
CAGTCGCTGG CACAGCTTCA GCGGGCCGCG CCGGTGCAGG TGATCAGCCT GTCTTCGGTG
CCGCTTTCGG AACGCCTGGC GGCCGAGCGC CTGCGGGCCG ATCTGCATTT CCGGCTCTCG
GGCGCCGTGC TGCGGCTGCC TTCGCTCGCG GAGCGGCGCG CGGACCTGCC GGACCTGGTC
AGGCATTTCT CGGAAACCTG TTCGGACCGA CGGAAGGGCG TCGTCCGCTT CACGCCGGCC
GCCATGCTGC GACTGCAAGC CTATGACTGG CCGGGAAACC TGCGCGAATT GCGCAATCTT
GTCGAGGCGC TTTCAGCCAC GTCCTTCAGC CGGCTCGTCG ATGCGGCGGA CCTGCCCCCG
GCCATCGCGC GGGGCAGGCG ACCGGGCCGC GAGGAGACGT TGCGCGACCG CGAGAGGGTC
GAGATCCTCG ATGCGGTGGC CGCATGCGGC GGCAACATGA CCGAAACGGC GCGGCGCCTG
GGGATCTCGC GCTCGACGCT TTACCTCAAG CTGGAACAAT ACGGGGTGCC GCGCGCCCGC
AAGCACTGA
|
|---|
| Protein sequence | MMAESIQKED WERFRALGSV PPSVREVVLR SWVRSKEGAR LHALRQAPSL GQDELNNLRS
RNTRLREAAK LAVRRTGYML DDAGAMLLLC DQKGVVLEAA GDARVLSRGA ENHLQPGGRW
DEAAIGTNAI GTALHLGKPV SITGVEHFCE AIHHWSCAAA PIHDPVTGKM LGVVDISAPA
QERMRRGAAL SVSLALQIEE ALRALELQER EALIGHLLSS GMGAGRGGDM AVFDRYGRQV
WASGASERLS TKLGPATAGL AEAPAFEGDP HLLAERFSAA LPEAGVDLIL SRGEALGLVV
SFPIRRRGER KDRIDLPAIA GIGSMMAPIC DEAAKLVESG VPLVIKGQAG SGKETLARAL
HEAGPQARMP LELVDCSLLE PAMLRGAPGG EWLARLSDGG GTLILDEPVE TPLPVQVALA
QSLAQLQRAA PVQVISLSSV PLSERLAAER LRADLHFRLS GAVLRLPSLA ERRADLPDLV
RHFSETCSDR RKGVVRFTPA AMLRLQAYDW PGNLRELRNL VEALSATSFS RLVDAADLPP
AIARGRRPGR EETLRDRERV EILDAVAACG GNMTETARRL GISRSTLYLK LEQYGVPRAR
KH
|
|---|
| |