| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4131 |
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| Symbol | |
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| ID | 4582681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 1287385 |
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| End bp | 1288434 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 639771438 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_917891 |
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| Protein GI | 119386836 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.314092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.627654 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTGC CCGAACCCAT CACCCTCGGC TCCGTGCGGC TTGGCCCGCC GGTCTTTCTG
GCGCCCATGG CCGGGATCAC CGACCTGCCG TTCCGCCGCG CCGTCGCGCG CCATGGCGGG
GCCGGGCTGA TGGTCAGCGA GATGGTCGCC TCGACCGAGA TGGTGACGCC GCGCCCCTCG
ACCCGCGCCG CCGTGCGCGC AAAGGCGCTG ACCGAGGGCG CGCTGCCCGT TTCGGTCCAG
ATCGCCGGTC GCGAGGCCGG CGCCATGGCC GAGACGGCAC GGATCGTGGC CGGCATGGGC
GCGCGCATCG TGGACATCAA CATGGGCTGC CCGGCGAAGA AGGTGACGGG CGGGCTGTCT
GGCGCCGCGC TGATGCGCGA CCTCGACCAT GCGCTGGGGC TGATCGATGC GGTGGTCGCC
GCGGTGCCCG ACCTGCCGGT GACGCTGAAG ATGCGGCTGG GCTGGGACGG CGATTGCCTG
AATGCGCCGG ACCTTGCGCG CCGCGCCGCC GGGGCGGGGG TCGGGATGCT GACCGTGCAT
GGCCGCACGC GGGCGCAGTT CTATACCGGC AGTGCCGACT GGGCGGCGAT CCGCGCCGTG
GCGAACCTGC CGGGCCGCCC GCCGCTGGTC GCCAATGGCG ACGTGGTGGA TGCGGCCTCG
GCCCGCGCGG CCCTGCGGCA ATCGGGCGCC GAGGCCGTCA TGGTCGGCCG CGGCGCGCAA
GGTGCGCCCT GGCGGCTGGC GCAGATCGCG CATGAGCTTT GGGGCACGCC CGCGCCGGAT
GTGCCGCAGG GCGCGCGGCT GGCCGAGGCA GTGGCCGAGC ATTACGACGA CATCCTGTCG
CTTTACGGGC GCGAACTGGG GCTGCGCGTC GCCCGCAAGC ACCTGGGCTG GTATGCCGAG
GCGAACGGCG CCCCGAACCG CGCCGAGCTT CTGCGCGCGC CCACGCCCGA GGCCGCGCTG
GCCGCGATCC GGGCCGGCTT CGGCGATGCC GATGCCGCGC CGGGCGATGC GGTCCATGCC
AACGCACAGG CGACCGAGGT GCCTTCATGA
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| Protein sequence | MTLPEPITLG SVRLGPPVFL APMAGITDLP FRRAVARHGG AGLMVSEMVA STEMVTPRPS
TRAAVRAKAL TEGALPVSVQ IAGREAGAMA ETARIVAGMG ARIVDINMGC PAKKVTGGLS
GAALMRDLDH ALGLIDAVVA AVPDLPVTLK MRLGWDGDCL NAPDLARRAA GAGVGMLTVH
GRTRAQFYTG SADWAAIRAV ANLPGRPPLV ANGDVVDAAS ARAALRQSGA EAVMVGRGAQ
GAPWRLAQIA HELWGTPAPD VPQGARLAEA VAEHYDDILS LYGRELGLRV ARKHLGWYAE
ANGAPNRAEL LRAPTPEAAL AAIRAGFGDA DAAPGDAVHA NAQATEVPS
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