| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4120 |
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| Symbol | |
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| ID | 4582670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 1272599 |
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| End bp | 1273921 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639771427 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_917880 |
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| Protein GI | 119386825 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.141301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGC TGATCATTTT CTTCATCCTG TCGGTGCTGC TGATCACCGG CATGCCGGTC
TCGATCGCGC TGGGGCTGAC GGTGTTCACC TTCCTGTTCG GCTTCACCAG CATTCCGATG
GACAGCATCG CGCTGAAGCT GTTCACCGGC ATCGAGAAGT TCGAGATCAT GGCGATCCCG
TTCTTCATCC TGGCCGGCAA CTTCCTGACC CATGGCGGCG TGGCCAGGCG GATGATCCGT
TTCGCGACCT CGATGGTGGG GCACTGGTAT GGCGGCATGG GGCTGGCGGC GGTGCTGTCC
TGCGCCATGT TCGCGGCGAT CTCGGGCTCC TCCCCGGCGA CGGTGATGGC GGTCGGGTCC
ATCATGATCC CCGCCATGGT GCAGATGGGC TATCCGGCAA AGTTCGGCGT GGCGACGGTT
GCGACCGCGG GCGGCCTTGG CATCCTGATC CCGCCGTCGA TCGTGATGGT GATGTATTCG
GTCGCGACCT CGGGCATGAT GGTGACCGGC CCCGATGGCG CGCAGGTGAT GGCCCCCTCG
ATCGGAGAGA TGTTCATCGC CGGCGTCGTG CCCGGGCTGC TCCTGGCGGC GATGTTCGGA
GTGACGACCG TCTGGCGGGC ATGGCGCAAC GGCTATCCCC GCCTGGATCG CGCAAGCTGG
CGCGACCGCT GGAAGGCCTT TCGCGAGTCG GTCTGGGGCC TGATGCTGAT CGCCATCATC
ATGGGCGGCA TCTATGGCGG CCTGTTCACG CCGACCGAGG CCGCCGCGGT CAGCGCCGTC
TATGCCTTCT TCATCGCCGT CTTCGTCTAC AAGGACATCA GGCTGCGCGA CGTGCCGCGC
GTGCTGCTGA ATTCGGCCGC GATGTCGGCG ATGCTGCTCT ACATCATCAC CAATGCGGTG
ATGTTCGCCT TCATCCTGAC GTCCGAGCAG ATCCCGCAGG CCTTGTCGGC CTGGATCGTC
GACCTGGGCC TGGGCTGGGT TGGGTTCCTG CTGGTCGTCA ACGTCATGCT GCTGGTCATC
GGCATGGTGA TGGAGCCGTC GGCCATCGTG CTGATCATGG CGCCGATCCT GTTCCCGGTG
GCCGCGAAAC TGGGCATCGA CCCGGTGCAT TTCGGCATCA TGATGGTGGT GAACATGGAG
ATCGGCCTCT GCACCCCGCC GGTGGGCCTG AACCTCTATG TCGGCTCGGC GATCTCCCGG
CTGGGGCTGA CGCAGGTATC GGTGGCGGTG GTGCCGTGGC TGCTGACCGC GCTGATCTTC
CTGGCGCTGA TCACATACAT ACCGGCCATC ACCCTGCTGT TGCCGAACCT GCTTGGGTTC
TGA
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| Protein sequence | MTALIIFFIL SVLLITGMPV SIALGLTVFT FLFGFTSIPM DSIALKLFTG IEKFEIMAIP
FFILAGNFLT HGGVARRMIR FATSMVGHWY GGMGLAAVLS CAMFAAISGS SPATVMAVGS
IMIPAMVQMG YPAKFGVATV ATAGGLGILI PPSIVMVMYS VATSGMMVTG PDGAQVMAPS
IGEMFIAGVV PGLLLAAMFG VTTVWRAWRN GYPRLDRASW RDRWKAFRES VWGLMLIAII
MGGIYGGLFT PTEAAAVSAV YAFFIAVFVY KDIRLRDVPR VLLNSAAMSA MLLYIITNAV
MFAFILTSEQ IPQALSAWIV DLGLGWVGFL LVVNVMLLVI GMVMEPSAIV LIMAPILFPV
AAKLGIDPVH FGIMMVVNME IGLCTPPVGL NLYVGSAISR LGLTQVSVAV VPWLLTALIF
LALITYIPAI TLLLPNLLGF
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