Gene Pden_4087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4087 
Symbol 
ID4582638 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1242832 
End bp1243461 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content65% 
IMG OID639771396 
Producthypothetical protein 
Protein accessionYP_917849 
Protein GI119386794 
COG category[R] General function prediction only 
COG ID[COG3926] Putative secretion activating protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.114514 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.565066 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAGCA ATTTCGACCG CTGCTTGGCC GAAACCCTCG CGCACGAGGG AGGCTGGGCT 
GACGACCCGC GCGATGCGGG CGGGGCGACC ATGAAGGGCA TCACCTTCGC CACCTATCGC
GCCTGGAAGA AGCGACCAAT CACGAAAGCT GAACTGCGCA ACATCACCGA TGCCGAGGTA
GCGGCCATCT ACCGGCAGAA CTATTGGGAC GCGGTTCGCG GCGACGATCT GCCGGCGGGG
CTGGATCTTG TCGCGTTCGA CGCATCCGTG AACAGCGGCG TCTCTCGGGG GGCAAAATGG
TTGCAATCGG CGCTCGGCGT TACGGCTGAC GGCATGATAG GCCCCCAGAC CATCGCCGCA
GCAAAAGCAG CCCATCCCGA GGCCGTCATT GACCGGGCGA TCAGCGCGCG GCTGGCGTTC
CTGCGCGTGG CGAAGAACAC CAAGACCGGG GCCGTGCTGT GGCCGACCTA CGGCAAGGGC
TGGACGCGGC GCGTGGAAAG CGTGCGCGAG GAAGCAATCG CCATGTCGAA GGTGACGACG
CCGAATGCCA CCAAGCCTGC GGCGCCGTCA GCGGGCATCA TCGCCGCGCT GCTGGCGCTT
TTCAAGTCCC CGTTCGGAGG AAAATCATGA
 
Protein sequence
MRSNFDRCLA ETLAHEGGWA DDPRDAGGAT MKGITFATYR AWKKRPITKA ELRNITDAEV 
AAIYRQNYWD AVRGDDLPAG LDLVAFDASV NSGVSRGAKW LQSALGVTAD GMIGPQTIAA
AKAAHPEAVI DRAISARLAF LRVAKNTKTG AVLWPTYGKG WTRRVESVRE EAIAMSKVTT
PNATKPAAPS AGIIAALLAL FKSPFGGKS