Gene Pden_4077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4077 
Symbol 
ID4582628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1232663 
End bp1233289 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content65% 
IMG OID639771386 
Product50S ribosomal protein L25/general stress protein Ctc 
Protein accessionYP_917839 
Protein GI119386784 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1825] Ribosomal protein L25 (general stress protein Ctc) 
TIGRFAM ID[TIGR00731] ribosomal protein L25, Ctc-form 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.518227 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.260504 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAAG AGATCCCTGA TCTGGTGGCC GAGGCACGCG CGGGGACAGG CAAGGGGGCC 
GCCCGCCAAG CTCGCCGCGA AGGCAAGGTG CCCGGCATCG TTTATGGCGA CGGCAAAGAG
CCGCAGCCGA TCCAAATCGA ATTCAACTCG CTGCTGACCA AGCTGCGCGC CGGCCGCTTC
ATGTCCACGC TGTGGAACCT GAAGGTCGAG GGCCAGGACG ACGTGCGCGT CGTCTGCCGC
GGCGTCCAGC GCGATGTGGT CAAGGACCTG CCGACGCATA TCGACTTCAT GCGCCTGCAC
CGCAACACGC GGGTGAACCT GTTCATCCAC GTGAACTTCG AGAACCAGGA CGAAGCCCCC
GGCCTGAAGC GCGGCGGCAC GCTGGTCGTG GTGCGCCCCG AGGTCGAGTT GGTCGTGACC
GCCTCGGACA TCCCCGAGCA GATCACCGTC GACCTGACCG GCAAGCAGAT CGGCGACACC
ATCCACATTA ACGACGTGGT GCTGCCGAAG GGCGTGAAGC CGACCATCGA CCGCAACTTC
GTCATCGCCA ATATCGCCGC GCCTTCGGGC CTGCGTTCGG CCGATAACGA AGAGGCTGCT
GCCGAAAGCG AAGCCACCGA AGCCTGA
 
Protein sequence
MAKEIPDLVA EARAGTGKGA ARQARREGKV PGIVYGDGKE PQPIQIEFNS LLTKLRAGRF 
MSTLWNLKVE GQDDVRVVCR GVQRDVVKDL PTHIDFMRLH RNTRVNLFIH VNFENQDEAP
GLKRGGTLVV VRPEVELVVT ASDIPEQITV DLTGKQIGDT IHINDVVLPK GVKPTIDRNF
VIANIAAPSG LRSADNEEAA AESEATEA