| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4072 |
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| Symbol | |
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| ID | 4582623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 1225149 |
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| End bp | 1227143 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639771381 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_917834 |
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| Protein GI | 119386779 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.518001 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCCA ACGACGACGA CCAGAAGCCC GACCCCAAGG ACGACGACCC TTCGCTGGAC
ATGTCGCAGG CCGCAGTCAA GCGCATGATC GCCGAAGGGC GCGAGCGTGG CTTCATCACC
TATGACCAGC TCAATGCCGT CCTGCCGCCC GAACAGGTCA GTTCCGACCA GATCGAGGAC
GTCATGTCCA TGCTGTCGGA AATGGACATC CGCGTGGTCG AGAGCGACGA GGAGGCCGAT
GAGGCCGAAC CGGGCGGCGA ACTGGCGACC ACGGCTTCGA CCTCGCGCGA GCTGACCGTC
GCCACCACCG AAACGGAAAA GCTGGACCGC ACCGACGACC CGGTGCGCAT GTATCTGCGC
GAGATGGGCT CGGTCGAGCT GCTGAGCCGC GAGGGCGAGA TCGCCATCGC CAAGCGCATC
GAGGCCGGCC GCAACACCAT GATTGCCGGG CTTTGCGAAA GCCCCCTGAC CTTCAAGGCC
ATCACCATGT GGCGCCAGGA GCTTCTGGAC GAGGACATCC TGCTGCGCGA CGTGATCGAC
CTCGAGACCA CCTTCGGCCG CGCGATGGAC GAGGACGGCG AGGAAGAGGA GGTGCTGCCG
ACCGAGACCC GCCCGGCCGC GAATACCGCC GGCGCCGCCG GCACCGCGCG CGAGGAGGAG
GAATTCGACG CCGACGGCAA CCCGATGGGC CGCGAGGAGG ACGAGGAGGA CGACGACGGC
CAGAACCTGT CGCTGGCCGC CATGGAAGCC TCGCTCAAGC CCAAGGTGCT GGAGACGCTG
GAGGCCATCG CACGGGGCTA TGAAGAGCTG TCGCACATGC AGGACAACCG CATGTCGGCG
ACGCTGAACG AGGACGGCAC CTTCTCGGCC GCGCAGGAAA GCGCCTATCA GGTGCTGCGC
TCGCATATCG TCGCGCTGGT GAACGAACTG CACCTGCACA ACAACCGCAT CGAGGCGCTG
GTCGACCAGA TCTATGGCAT CAACCGCCGT ATCGTCACCA TCGATTCGAA CGTGGTGAAG
CTGGCCGACG CCGCGCGCAT CAACCGGCGC GAATTCATCG ACGCCTATCG CGGCAGCGAA
CTCGACCCGA CCTGGGTCGA GCGCATGATG CAGAACAAGG GCCGCGGCTG GCAGGCGCTG
TTCGAGAAAT CCCGCCCCCA GGTGGAGAAC CTGCGCGCCG AGATGGCCAT GGTCGGCCAG
CATGTCGGCG TCGATATCGA GGAATTCCGC CGCATCGTCA GCCAGGTCCA GCGCGGCGAA
AAGGAATCGC GCCAGGCCAA GAAGGAAATG GTCGAGGCGA ACCTGCGGCT GGTGATCTCG
ATCGCCAAGA AATACACGAA CAGGGGCCTG CAATTCCTTG ATCTCATTCA GGAAGGCAAT
ATCGGCCTGA TGAAGGCCGT GGACAAGTTC GAGTATCGGC GCGGCTACAA GTTCTCGACC
TATGCGACCT GGTGGATCCG GCAGGCGATC ACGCGCTCGA TCGCCGACCA GGCCCGCACC
ATCCGCATCC CGGTCCACAT GATCGAGACG ATCAACAAGC TGGTGCGCAC CGGCCGCCAG
ATGCTGCACG AGATCGGCCG CGAGCCGACG CCCGAGGAAC TGGCCGAAAA GCTGCAGATG
CCGCTGGAAA AGGTCCGCAA GGTGATGAAG ATCGCCAAGG AGCCGATCAG CCTCGAAACC
CCCATCGGGG ACGAAGAGGA CAGCCAGCTT GGCGATTTCA TCGAGGACAA GAACGCCGTC
CTGCCGCTGG ACAGCGCCAT TCAGGAAAAC CTGAAGGAGA CCACCACGCG CGTCCTGGCC
AGCCTGACCC CGCGCGAGGA GCGGGTGCTG CGCATGCGCT TCGGCATCGG CATGAACACC
GACCACACTC TGGAAGAGGT CGGCCAGCAG TTCAGCGTGA CGCGCGAGCG CATCCGCCAG
ATCGAGGCCA AGGCGCTGCG CAAGCTCAAG CATCCCAGCC GGTCGCGCAA GCTGCGGTCC
TTCTTGGACC AGTAA
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| Protein sequence | MAANDDDQKP DPKDDDPSLD MSQAAVKRMI AEGRERGFIT YDQLNAVLPP EQVSSDQIED
VMSMLSEMDI RVVESDEEAD EAEPGGELAT TASTSRELTV ATTETEKLDR TDDPVRMYLR
EMGSVELLSR EGEIAIAKRI EAGRNTMIAG LCESPLTFKA ITMWRQELLD EDILLRDVID
LETTFGRAMD EDGEEEEVLP TETRPAANTA GAAGTAREEE EFDADGNPMG REEDEEDDDG
QNLSLAAMEA SLKPKVLETL EAIARGYEEL SHMQDNRMSA TLNEDGTFSA AQESAYQVLR
SHIVALVNEL HLHNNRIEAL VDQIYGINRR IVTIDSNVVK LADAARINRR EFIDAYRGSE
LDPTWVERMM QNKGRGWQAL FEKSRPQVEN LRAEMAMVGQ HVGVDIEEFR RIVSQVQRGE
KESRQAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST
YATWWIRQAI TRSIADQART IRIPVHMIET INKLVRTGRQ MLHEIGREPT PEELAEKLQM
PLEKVRKVMK IAKEPISLET PIGDEEDSQL GDFIEDKNAV LPLDSAIQEN LKETTTRVLA
SLTPREERVL RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ IEAKALRKLK HPSRSRKLRS
FLDQ
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