| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4062 |
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| Symbol | |
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| ID | 4582613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 1215444 |
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| End bp | 1217066 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639771371 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_917824 |
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| Protein GI | 119386769 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.651433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCGCC AGCGCCTTTA CCTCTACGAC ACCACGCTCC GCGACGGACA GCAGACCCAG
GGCGTGCAGT TCTCCGCCGC CGAGAAGGCA GAGATCGCGC AGATGCTGGA CCGGCTGGGC
GTGGATTACA TCGAGGGCGG CTGGCCCGGC GCCAACCCGA CCGACAGCGA CTTCTTTGCC
CAGGCGCCCG CGACCCGCGC CACCATGACC GCCTTCGGCA TGACCAAGCG CGCCGGGCGC
TCGGCCGATA ACGACGACGT GCTGGCGGCG GTGATGAATG CAGGCACCCG CGCCGTCTGT
CTGGTCGGCA AGACGCATCC CTTCCATGTC CGTGAGGCGT TGGGGATCTC GCTGGAGGAA
AACCTCGACA ATATCCGCGC CTCGGTCGCG CATCTGGTGG CTTCGGGGCG CGAGGCGCTG
TTCGATGCCG AGCATTTCTT CGACGGCCAT GCCGACGATC CCGATTATGC GCTGGCCTGC
CTGCATGCCG CGCTGGAGGC CGGCGCGCGC TGGATCGTGC TGTGCGACAC CAACGGCGGC
ACCCTGCCCG AGCGGGTGGG TCAGGTGACC CGCTCGGTGA TCGCCGGCGG CATTCCGGGC
GAGCGGCTGG GCATCCATTG CCATGACGAC ACCGGCAATG CGGTGGCCTG CACGCTGGCT
GCCGTCGATG CCGGCGCGCG GCAGGTGCAG GGCACGCTGA ACGGGCTGGG CGAGCGCTGC
GGCAATGCCA GCCTGACCAG CATCATCCCG ACCCTGCTGC TGAAGGAGCC CTATCGCTCG
GCGCTTGCCA CCGGCGTCGC CCCCGAAGGG CTGGCCGGTC TTACGCGCAT CTCGCGCCGG
CTGGACGAGA TCCTGAACCG CGCGCCGACC CGCGCCGCGC CCTATGTCGG CGCCTCGGCC
TTTGCCCACA AGGCCGGGCT GCATGCCAGC GCCATCCTGA AGAACCCCGC GACCTACGAG
CATGTCGACC CGGCCACGGT GGGCAATGAG CGCATCATCC CGATGTCCAA CCAGGCCGGG
CAGTCGAACC TGCGCGCCCG CCTTGCCGGG GCGGGGATCG AGGTCGGCCG CGACGATCCG
GCCCTGGCGC GCATCCTCGA CCTGGTCAAG GCGCGCGAGG ATGCGGGCTA TGCCTATGAC
GGCGCGCAGG CCAGCTTCGA GCTGCTGGCC TTGGCCGAGC TGGGCCGGAT GCAGCACTAC
TTCACCGTCG AGCGCTATCG CGTCACCGTC GAGCGGCGCA AGAATGCGCT GGGAAAGCGC
ATCTCGGTCT CGGAGGCCGT GGTGGTGGTG CAGATCGGCG GCGAGCGCAT GCTTTCGGTC
AGCGAAAGCC TGGACGAGCA GGGGCATGAT CGCGGCCCCG TCAACGCGCT GTGGCGGGCG
CTGGCCAAGG ATCTGGGCCC CTATCAGGCC GCCATCGACG ACATGCATCT GGTCGATTTC
CGCGTCCGCA TCATCGGCGA AGGGGTCGAG GCGACGACCC GGGTCATCAT CGACAGCGCC
GACGGCCATG GCCATCGCTG GTCCACCGTC GGCGTCTCGC CCAACATCGT CGATGCCAGC
TTCGAGGCGC TGGTCGAGGC GATCCGCTGG AAGCTGATCC GCGACGGGGT GGTGCCGGCA
TGA
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| Protein sequence | MTRQRLYLYD TTLRDGQQTQ GVQFSAAEKA EIAQMLDRLG VDYIEGGWPG ANPTDSDFFA
QAPATRATMT AFGMTKRAGR SADNDDVLAA VMNAGTRAVC LVGKTHPFHV REALGISLEE
NLDNIRASVA HLVASGREAL FDAEHFFDGH ADDPDYALAC LHAALEAGAR WIVLCDTNGG
TLPERVGQVT RSVIAGGIPG ERLGIHCHDD TGNAVACTLA AVDAGARQVQ GTLNGLGERC
GNASLTSIIP TLLLKEPYRS ALATGVAPEG LAGLTRISRR LDEILNRAPT RAAPYVGASA
FAHKAGLHAS AILKNPATYE HVDPATVGNE RIIPMSNQAG QSNLRARLAG AGIEVGRDDP
ALARILDLVK AREDAGYAYD GAQASFELLA LAELGRMQHY FTVERYRVTV ERRKNALGKR
ISVSEAVVVV QIGGERMLSV SESLDEQGHD RGPVNALWRA LAKDLGPYQA AIDDMHLVDF
RVRIIGEGVE ATTRVIIDSA DGHGHRWSTV GVSPNIVDAS FEALVEAIRW KLIRDGVVPA
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