Gene Pden_4007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4007 
Symbol 
ID4582558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1148956 
End bp1150926 
Gene Length1971 bp 
Protein Length656 aa 
Translation table11 
GC content68% 
IMG OID639771316 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_917769 
Protein GI119386714 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.755968 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.278919 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAAG CGGCGCCCCT GCTTCGCCGC TCGGTGCGCC ACAAGCTGCT GGCAATCGCC 
CTGATCCCCG TCCTGGTGAT CCTGCCCCTG TTCCTTGGCG TCACCCTGTA TCAATGGTCG
CACAAGCTGG ACCGGCTGCT GCTGGTCAAG GTCAACAGCG ACCTGACCGT GGCCCGGCAA
TATCTGGGCC GCATCCTCGA TACGACCGGC GAGCGGATAG AGATGCTGGC CCGCTCCGAG
GAATTCGCCC GCACGACCGA TCCGGGCGCG CTGCTGGAAA CATATCGCGA CAGGCTGGGG
CTGGACTACC TGTATCTGGC CGCCCCGGAT GGCCGGATCG TGGCATCGAG CCCGGAAGAT
GCCCATCCCG TCCCGCCCCG GAACCCGGCG CCCGCACAAG GCGCATGGAA CACGCTGGAG
GTTTTCGACC GCGACCAGCT TTACGCCATC GCTCCGGCCC TTGCCGTCCG CGCCGAAATG
GAGCGGCCGG GCAGCGCGGC GGCAAGCCGG TCCTCGATCG AGACCCGGGG CATCGTGGCG
CAGTCGATCG TCGCGGCGAA ACTGCCCGGC GAGGATGCCG CCGCATCCAT GGTCGGAGGC
ATCCTGCTGA ACCGCAACCT GTCGGTCGTC GACAGCATCA ACGCCCTGAT CTATCGCTCC
GACAGCCTGC CCGAAGGCAG TCACGGAACC ACCTCGCTGT TTCTCGACGA CCTTCGCATC
GCCACCAACG TGACCGTGCC CGGCGGTGCC CGCGCCCTGG GCACCCGTGC CTCGACCGCG
GTGCGCGACC GCGTGATCGG ACAGGGCCAG GTCTGGCTGG ACCGCGCGCA GGTTCTGGAC
GACTGGTATG TCTCGGCCTA TGCCCCGCTT CGCGACGGCG CCGGCAGGCC GGTCGGGATG
ATTTACGTCG GCATCCTCGA ACATCCGTTC GCCGCCGCGA AACGCCGCAC GGTGGGATGG
GTGTTGATCG GCTTCCTGTC GGTGGCGCTG GTGACGGTGC CGTTGTTCCT GCGTTGGGCG
CGCAGCATCT TTCGTCCGCT TGAGCGTATC GGGGCGACCT TCGAAAAGGT CGGCGCGGGC
GATCTTGCGG CACGCACCGG CATCAGCCGC GGCGACGACG AAATCGCCGA ACTTGCCCTG
GCCCTTGATG GCGTGCTGGC GCAGCTCCAG GACCACGACC GGCAGATGCG GGCCTGGAAT
GACGAGCTGA ACCAGAAGGT GGAAGACCGC ACCGCGGCGC TGCGGCGGGC CGCGCAAGAG
CTTGAGGCCG CGACCTATCA GCTGGTCCAG TCCGAAAAAC TGGCCGCTCT TGGCGAAATA
TCGGCCGGCA TCGCGCATGA GATCAACAAC CCGCTGGCCG TGATCCAGGG CAATCTGGAC
GTGCTGCGCG AAGTGCTGGG CGATGCTGCC ACGCCCGCCG ATACCGAATT GCGGCTGATC
GACGATCAGA TCCGGCGCAT CTCGCTGATC GTGACGCAAC TGCTGGACTT CGCGCGGGCG
GACCAGGCGG GCGAGGACCA TCCCGCCACC GATCTTGCGC AGGCGGTGGC CGAATGCGTG
CCGCTGGTGG GGCATATGCT GGCGCGCTCC TCGGTCTCGC TGCGCCAGGA CATCCGCTCG
GATCGTCCGG TCCGCATCAG TCGCATCGCC GTGCAGCAGG TGCTGGTCAA CCTGATCGTC
AACGCGGTCC ACGCCATGCC GAAAGGCGGC GAGATCCGCA TTGCCGGGCA GGACGAGGAT
CGCGCCGGCG CGGCAGGCGT GCTGCTGGAG GTCGCCGACG ATGGCGAAGG GATACCCGCC
GCGATCCTGA AGAACCTGTT CGAACCCTTC GTCACCAGCC GCGCCGGCAG CGGCGGCACC
GGCCTGGGCC TGTCGATCTG CCGCAGGCTG ATCGAGCGGC AAGGCGGCAC CATCGCCGTC
AGCAGCGACA ACGGGGGTAG CACCTTCCGC ATCTGGCTTC CGGCCGCATG A
 
Protein sequence
MPEAAPLLRR SVRHKLLAIA LIPVLVILPL FLGVTLYQWS HKLDRLLLVK VNSDLTVARQ 
YLGRILDTTG ERIEMLARSE EFARTTDPGA LLETYRDRLG LDYLYLAAPD GRIVASSPED
AHPVPPRNPA PAQGAWNTLE VFDRDQLYAI APALAVRAEM ERPGSAAASR SSIETRGIVA
QSIVAAKLPG EDAAASMVGG ILLNRNLSVV DSINALIYRS DSLPEGSHGT TSLFLDDLRI
ATNVTVPGGA RALGTRASTA VRDRVIGQGQ VWLDRAQVLD DWYVSAYAPL RDGAGRPVGM
IYVGILEHPF AAAKRRTVGW VLIGFLSVAL VTVPLFLRWA RSIFRPLERI GATFEKVGAG
DLAARTGISR GDDEIAELAL ALDGVLAQLQ DHDRQMRAWN DELNQKVEDR TAALRRAAQE
LEAATYQLVQ SEKLAALGEI SAGIAHEINN PLAVIQGNLD VLREVLGDAA TPADTELRLI
DDQIRRISLI VTQLLDFARA DQAGEDHPAT DLAQAVAECV PLVGHMLARS SVSLRQDIRS
DRPVRISRIA VQQVLVNLIV NAVHAMPKGG EIRIAGQDED RAGAAGVLLE VADDGEGIPA
AILKNLFEPF VTSRAGSGGT GLGLSICRRL IERQGGTIAV SSDNGGSTFR IWLPAA