Gene Pden_3979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3979 
Symbol 
ID4582530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1118017 
End bp1118787 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content70% 
IMG OID639771288 
Productenoyl-CoA hydratase/isomerase 
Protein accessionYP_917741 
Protein GI119386686 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.776051 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTTTC AGACCATCGA AGTCACGCAT CGGGACGGCA TCGCAAGGCT GGCTCTGAAC 
CGGCCCGACG TGGTCAACGC GCTCAATCGC ACCATGCGCG CCGAGATCGT CGCGGCACTG
ACGAACTTGC CGCAGGAGAC GCGCTGCGTG GTGCTGACCG GCAACGGGCG CGGCTTCTGT
TCGGGCCAGG ATCTGACCGA TGCCGGCGGC GGGTTCGACG TCGAAACCAT CCTGCGCGAG
GAATACGAGC CGATGCTGGC CGCCATCGCC GAGGCGCCGG TGCCTGTGAT CGCCGCGGTG
AACGGCATCG CGGCCGGGGC GGGGGCCAAT CTGGCGCTGG CCGCCGATGT GGTCATCGCT
ACGGAAAGCG CCAGCTTCGT GCAGGCTTTC AGCCGGATCG GGCTGATCCC GGATGCGGGG
GGGACGTTCA TCGTGCCGCG TTCGGTCGGC GTGCCGCGTG CCATGGGGAT GATGCTGTTC
GCCGACCGCA TCCCCGCGAC CCGGGCGGCG GAATGGGGGC TGATCTGGGA GGCGGTGCCG
GACGCGGAGT TCGAGACCGT CGTGGCCGCG CGGGCCAAGG CCCTGGCCGA GGGGCCGACG
GCGGCTTTCC TGGCGATCCG GCAGGCTTTG CGCGCCTCGG GCAACAACGA CATGGCCGGG
CAATTGCGGC TGGAGGCCCG GCTGCAAGGC GAGATGGCCC GGACCGAGGA TTTCGCCGAA
GGTGTCGCGG CCTTCCTGGA AAAGCGCGCG CCCCGGTTCA AGGGACGCTG A
 
Protein sequence
MSFQTIEVTH RDGIARLALN RPDVVNALNR TMRAEIVAAL TNLPQETRCV VLTGNGRGFC 
SGQDLTDAGG GFDVETILRE EYEPMLAAIA EAPVPVIAAV NGIAAGAGAN LALAADVVIA
TESASFVQAF SRIGLIPDAG GTFIVPRSVG VPRAMGMMLF ADRIPATRAA EWGLIWEAVP
DAEFETVVAA RAKALAEGPT AAFLAIRQAL RASGNNDMAG QLRLEARLQG EMARTEDFAE
GVAAFLEKRA PRFKGR