| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3977 |
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| Symbol | |
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| ID | 4582528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 1115530 |
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| End bp | 1117491 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639771286 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_917739 |
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| Protein GI | 119386684 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0556794 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCTG AACTTGGCCA TTTCGCACTG ATCCTTGCCT TTGCCGTGGC CATCTTCCAG
ATGATCGTGC CGATGATCGG CGCCGGCAAG GGCTGGGGCG GCTGGATCGA CTCCGCGCGC
CCCGCCGCGC TGGCGCAATT CGGGCTGGTC GGCATTTCCT TCGTCGCGCT GACCATGGCC
TTCGTGACCT CGGACTTCTC GGTCGCGCTG GTCTACCAGA ACTCGCATAC CGCCAAGCCG
ATGATCTACA AGATCAGCGG CGTCTGGGGC AACCACGAGG GCTCGATGCT GCTCTGGGTG
CTGATCGTGG CGCTGTTCGG CGCGATGGCG GCGATATTCG ACGCGAACCT GCCGCCCAAG
CTGCGGGCGC GGGTTCTGGC GGTGCAGGGC TCGATCGGCG CGGCGTTCCT GGGCTTCATC
CTGTTCACCT CGAACCCCTT CCTGCGCATG GCGAGCCCGC CTTTCGACGG GCGCGACCTG
AACCCGCTCT TGCAGGACCC GGGCCTCGCC TTCCATCCGC CCTTCCTCTA CCTCGGCTAT
GTCGGGCTCA GCATGGCCTT CAGCTTTGCC GTGGCCGCGC TGATCGAGGG GCGGGTCGAC
GCCGCCTGGG CGCGCTGGGT CAGGCCATGG ACGCTGGCGG CCTGGGTCTT CCTGACCATC
GGCATCGCGC TGGGTTCGTG GTGGGCCTAT TACGAGCTGG GCTGGGGCGG CTTCTGGTTC
TGGGATCCGG TGGAAAACGC CAGCTTCATG CCCTGGCTGA TCGCCGCCGC GCTCCTGCAT
TCCGCCATCG TGGTGGAAAA GCGCGAGGTG CTGAAAAGCT GGACCATCCT GCTGGCGATC
ATGGCTTTCG GCTTTTCGCT GATCGGCACC TTCATCGTGC GCTCGGGGGT CATCACCTCG
GTCCACAGCT TTGCCAGCGA CCCCAAGCGC GGGGTGTTCA TCCTGGCGAT CCTGGCGTTC
TTCGTCGGCG GCGCGCTGCT GCTTTACACC TTCCGCGCCG CCTCGATGCA GGCGCGAGGC
GCCTTCACCC CAGTCTCGCG CGAGGGGGCG CTGGTGCTCA ACAACATCCT GCTGGCGGTC
TCGACCTTCG TGGTCTTCAT CGGCACCGTC TGGCCCCTGG TGGCCGAGAT GCTGTGGGAC
CGCAGGCTGT CGGTGGGCGC CCCCTTCTTC GAGCAGGCCT TCACGCCCTT CATGGTGGCG
CTGGCGATCA TCCTGCCCGT GGGCGCGATC CTGCCGTGGA AGCGCGGCAA GCTCAAACGC
GTGCTGTATC CGCTGCGCGG CGCGCTGGTC TTTGCCGGGG CGGTGATGGC GCTGGTCTTT
GCCGTCTCGA CCGGCCATTC GGCGCTGGCG GTGATCGGCG CCGGGCTGGG TGCCTGGCTG
GTTGCGGGCG CGGTCGTGGA CCTGTGGCTG CGCACCGGCA ACTCCGGCCT GTCCCGCCTG
CGCCGGCTGC CGCGCGCTGA TTGGGGCAAG GCCGTGGCCC ATGCCGGGCT GGGCGTCACC
TTCATCGGCA TCAGCCTGCT GATGGCCTGG CAGGTCGAGG ACATCCGCGT GGCCCGCATC
GGCGAGACCT TCACCGTCGC CGGCTACGAC ATCACCCTGG AAAGCGTGGA AGAGCGCCCC
GGCCCGAACT ACAACTCGAT CACGGCCGCG ATGACGGTGG ATCGCAACGG GCAGCAGGTT
GCGCTGCTGC ATCCCGAAAA GCGGGTCTAT CCGGTGCAAT CCATGCCCAC GACCGAGGCG
GCGATCCAGA GCGGCCCGTT CCGCGACCTC TACCTGGTCA TCGGCGACGA ACAGCAGGGC
GGCGGCTGGG CGGTGCGCGT CTATATCAAG CCCTTCGCCA GCTGGATCTG GCTGGGCTCG
GCGCTGATGG CGCTTGGCGG CTTCATCAGC CTGTCGGACC GGCGCTATCG CGTCGCCGCC
GGCGCCCGCC ATGCCCGCAC CGCACCCCAG CCGGCGGAGT AG
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| Protein sequence | MIAELGHFAL ILAFAVAIFQ MIVPMIGAGK GWGGWIDSAR PAALAQFGLV GISFVALTMA
FVTSDFSVAL VYQNSHTAKP MIYKISGVWG NHEGSMLLWV LIVALFGAMA AIFDANLPPK
LRARVLAVQG SIGAAFLGFI LFTSNPFLRM ASPPFDGRDL NPLLQDPGLA FHPPFLYLGY
VGLSMAFSFA VAALIEGRVD AAWARWVRPW TLAAWVFLTI GIALGSWWAY YELGWGGFWF
WDPVENASFM PWLIAAALLH SAIVVEKREV LKSWTILLAI MAFGFSLIGT FIVRSGVITS
VHSFASDPKR GVFILAILAF FVGGALLLYT FRAASMQARG AFTPVSREGA LVLNNILLAV
STFVVFIGTV WPLVAEMLWD RRLSVGAPFF EQAFTPFMVA LAIILPVGAI LPWKRGKLKR
VLYPLRGALV FAGAVMALVF AVSTGHSALA VIGAGLGAWL VAGAVVDLWL RTGNSGLSRL
RRLPRADWGK AVAHAGLGVT FIGISLLMAW QVEDIRVARI GETFTVAGYD ITLESVEERP
GPNYNSITAA MTVDRNGQQV ALLHPEKRVY PVQSMPTTEA AIQSGPFRDL YLVIGDEQQG
GGWAVRVYIK PFASWIWLGS ALMALGGFIS LSDRRYRVAA GARHARTAPQ PAE
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