Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_3934 |
Symbol | |
ID | 4582485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | + |
Start bp | 1070820 |
End bp | 1072262 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639771243 |
Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
Protein accession | YP_917696 |
Protein GI | 119386641 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3200] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
TIGRFAM ID | [TIGR01358] 3-deoxy-7-phosphoheptulonate synthase, class II |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGGCA CAGATTGCAT GAAGGATAGG ATCATGGCAC CGACGAATTC CAGTTCCGCG ACCCCGGCAC AGGCATGGGA CAAGCGTGGC TGGCGCGCCT ATCCGCGCGT CCAGATGCCT GACTATCCCG ACCAGCCCGG CGTCGCCGCC GTCGAGGCGC AGCTGGCCAA ATACCCGCCG CTGGTCTTTG CCGGCGAGGC GCGCCGCCTG AAAGCCTCGC TGGGCGAGGT CGCGGCCGGC CGCGCCTTCC TGCTGCAGGG CGGCGATTGC GCGGAAAGCT TTGCCGAATT CTCGGCCGAC AACATCCGCG ACACGTTCAA GGTCATGCTG CAAATGGCCG TCGTGCTGAC CTGGGGCGCG CAGCTTCCGG TGGTCAAGGT CGGCCGCATG GCGGGCCAGT TCGCCAAGCC GCGCTCGGCC CCGACCGAGA AGATGGGCGA GCAGGAACTG CCCAGCTATC GCGGCGACAT CATCAACGGC TTCGATTTCA CGCCCGAGGC GCGCATCCCC GATCCGCAGC GCATGCTTGC GGCCTATACC CAGGCGGCGG CCTCGCTGAA CCTGCTGCGC GCCTTCTCGA CCGGGGGCTA TGCCGACATC CACCGGGTGC AAAGCTGGAT CAGCGATTTC ACCGGCGGCG AGGAGGCGGC GCGCTATCGC GATATCGCCG AGCGCATCAG CGACGCGATG GCCTTCATGG CGGCGGCGGG CGTGACCTCG GAAACCGCGC ATGACCTCGG CAAGGTCGAT TTCTACACCA GCCACGAGGC CCTGCTGCTG GAATACGAAG AGGCTCTGGC ACGGATCGAT TCGACCACCG GCCTGCCGGT CGCGGGCTCG GGCCACATGA TCTGGATCGG CGACCGCACC CGCCAGGTGG ACGGTGCCCA TGTCGAGTTC TGCCGCGGCG TGCAGAACCC GATCGGGCTG AAATGCGGCC CCTCGATCAG CGACAGCGAC CTCAAGGCGC TGATCGCCAA GCTGAACCCG GAAAACGAGC CGGGCCGGCT GACGCTGATC GCGCGCTTCG GCGCCGGTTC GGTCGGCGAC CATCTGCCGC GGCTGATCCG TGCCGTGCGC GAAGAGGGCG CGAATGTCGT GTGGTCCTGC GATCCGATGC ATGGCAACAC CATCAAGTCG GCCTCGGGCT ACAAGACCCG GCCCTTCGAT TCGGTGCTGC GCGAGGTGCG CGAATTCTTT GCCGTCCACC GCGCCGAGGG CACCATCCCA GGTGGCGTGC ATTTCGAGAT GACCGGCCAG GACGTGACCG AATGCATCGG CGGCGTGCGC GCCGTCACCG ACGAGGATCT GTCGAACCGC TATCACACGG CCTGCGATCC GCGGCTGAAC GCCAGCCAGT CGCTGGAACT GGCCTTCCTG GTGGCCGAGG AGTTGCGCAA TCGCCGCGTC AACGGCGCGA GCAAGCAGGC CAAGGCGGGC TGA
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Protein sequence | MAGTDCMKDR IMAPTNSSSA TPAQAWDKRG WRAYPRVQMP DYPDQPGVAA VEAQLAKYPP LVFAGEARRL KASLGEVAAG RAFLLQGGDC AESFAEFSAD NIRDTFKVML QMAVVLTWGA QLPVVKVGRM AGQFAKPRSA PTEKMGEQEL PSYRGDIING FDFTPEARIP DPQRMLAAYT QAAASLNLLR AFSTGGYADI HRVQSWISDF TGGEEAARYR DIAERISDAM AFMAAAGVTS ETAHDLGKVD FYTSHEALLL EYEEALARID STTGLPVAGS GHMIWIGDRT RQVDGAHVEF CRGVQNPIGL KCGPSISDSD LKALIAKLNP ENEPGRLTLI ARFGAGSVGD HLPRLIRAVR EEGANVVWSC DPMHGNTIKS ASGYKTRPFD SVLREVREFF AVHRAEGTIP GGVHFEMTGQ DVTECIGGVR AVTDEDLSNR YHTACDPRLN ASQSLELAFL VAEELRNRRV NGASKQAKAG
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