Gene Pden_3934 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3934 
Symbol 
ID4582485 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1070820 
End bp1072262 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content67% 
IMG OID639771243 
Productphospho-2-dehydro-3-deoxyheptonate aldolase 
Protein accessionYP_917696 
Protein GI119386641 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3200] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR01358] 3-deoxy-7-phosphoheptulonate synthase, class II 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGGCA CAGATTGCAT GAAGGATAGG ATCATGGCAC CGACGAATTC CAGTTCCGCG 
ACCCCGGCAC AGGCATGGGA CAAGCGTGGC TGGCGCGCCT ATCCGCGCGT CCAGATGCCT
GACTATCCCG ACCAGCCCGG CGTCGCCGCC GTCGAGGCGC AGCTGGCCAA ATACCCGCCG
CTGGTCTTTG CCGGCGAGGC GCGCCGCCTG AAAGCCTCGC TGGGCGAGGT CGCGGCCGGC
CGCGCCTTCC TGCTGCAGGG CGGCGATTGC GCGGAAAGCT TTGCCGAATT CTCGGCCGAC
AACATCCGCG ACACGTTCAA GGTCATGCTG CAAATGGCCG TCGTGCTGAC CTGGGGCGCG
CAGCTTCCGG TGGTCAAGGT CGGCCGCATG GCGGGCCAGT TCGCCAAGCC GCGCTCGGCC
CCGACCGAGA AGATGGGCGA GCAGGAACTG CCCAGCTATC GCGGCGACAT CATCAACGGC
TTCGATTTCA CGCCCGAGGC GCGCATCCCC GATCCGCAGC GCATGCTTGC GGCCTATACC
CAGGCGGCGG CCTCGCTGAA CCTGCTGCGC GCCTTCTCGA CCGGGGGCTA TGCCGACATC
CACCGGGTGC AAAGCTGGAT CAGCGATTTC ACCGGCGGCG AGGAGGCGGC GCGCTATCGC
GATATCGCCG AGCGCATCAG CGACGCGATG GCCTTCATGG CGGCGGCGGG CGTGACCTCG
GAAACCGCGC ATGACCTCGG CAAGGTCGAT TTCTACACCA GCCACGAGGC CCTGCTGCTG
GAATACGAAG AGGCTCTGGC ACGGATCGAT TCGACCACCG GCCTGCCGGT CGCGGGCTCG
GGCCACATGA TCTGGATCGG CGACCGCACC CGCCAGGTGG ACGGTGCCCA TGTCGAGTTC
TGCCGCGGCG TGCAGAACCC GATCGGGCTG AAATGCGGCC CCTCGATCAG CGACAGCGAC
CTCAAGGCGC TGATCGCCAA GCTGAACCCG GAAAACGAGC CGGGCCGGCT GACGCTGATC
GCGCGCTTCG GCGCCGGTTC GGTCGGCGAC CATCTGCCGC GGCTGATCCG TGCCGTGCGC
GAAGAGGGCG CGAATGTCGT GTGGTCCTGC GATCCGATGC ATGGCAACAC CATCAAGTCG
GCCTCGGGCT ACAAGACCCG GCCCTTCGAT TCGGTGCTGC GCGAGGTGCG CGAATTCTTT
GCCGTCCACC GCGCCGAGGG CACCATCCCA GGTGGCGTGC ATTTCGAGAT GACCGGCCAG
GACGTGACCG AATGCATCGG CGGCGTGCGC GCCGTCACCG ACGAGGATCT GTCGAACCGC
TATCACACGG CCTGCGATCC GCGGCTGAAC GCCAGCCAGT CGCTGGAACT GGCCTTCCTG
GTGGCCGAGG AGTTGCGCAA TCGCCGCGTC AACGGCGCGA GCAAGCAGGC CAAGGCGGGC
TGA
 
Protein sequence
MAGTDCMKDR IMAPTNSSSA TPAQAWDKRG WRAYPRVQMP DYPDQPGVAA VEAQLAKYPP 
LVFAGEARRL KASLGEVAAG RAFLLQGGDC AESFAEFSAD NIRDTFKVML QMAVVLTWGA
QLPVVKVGRM AGQFAKPRSA PTEKMGEQEL PSYRGDIING FDFTPEARIP DPQRMLAAYT
QAAASLNLLR AFSTGGYADI HRVQSWISDF TGGEEAARYR DIAERISDAM AFMAAAGVTS
ETAHDLGKVD FYTSHEALLL EYEEALARID STTGLPVAGS GHMIWIGDRT RQVDGAHVEF
CRGVQNPIGL KCGPSISDSD LKALIAKLNP ENEPGRLTLI ARFGAGSVGD HLPRLIRAVR
EEGANVVWSC DPMHGNTIKS ASGYKTRPFD SVLREVREFF AVHRAEGTIP GGVHFEMTGQ
DVTECIGGVR AVTDEDLSNR YHTACDPRLN ASQSLELAFL VAEELRNRRV NGASKQAKAG