Gene Pden_3917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3917 
Symbol 
ID4582468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1051318 
End bp1052799 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content66% 
IMG OID639771226 
Producturacil-xanthine permease 
Protein accessionYP_917679 
Protein GI119386624 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG2233] Xanthine/uracil permeases 
TIGRFAM ID[TIGR00801] uracil-xanthine permease
[TIGR03173] xanthine permease 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.51079 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCAG TAGATACCAA CCCCGGCTTC GATCCGGTCG AGGAGCGCAT CGCCGCCCCT 
CGACTGCTCG CCCTGGGTTT CCAGCATGTT CTGGTCATGT ATGCCGGCGC CATCGCGGTG
CCGCTGATCG TCGGCCGCGC CCTGCAGCTT TCGCCGCAAG ACGTGGCCTT TTTGATTTCC
GCCGACCTTT TCGTCTGCGG GATCGTCACC ATCATCCAGT CCTTCGGCGC CACGCAATGG
TTCGGCATCA AGCTGCCGGT CATGATGGGC GTGACCTTCG CCGCCGTCGG CCCCATGGTC
GCCATCGCCT CGTCGAACCC CGGCCAGGAA GGCGCGCGGA TGATGTTCGG CGCCATCATG
GCGGCGGGGA TCATCTCGAT CTTCTTCGCA CCGCTGGTCA GCCGGCTCCT GCGCTTTTTC
CCCAGCGTGG TCACCGGCAC GGTGATCCTG GTGATCGGCG TCAGCCTGAT GCCAGTGGGC
ATCAACTGGA TCTTCGGCCT GCCGGTCGGC CCCACGGCGC CGCAACTGGT CGACCCCGCC
GCCCAGGCCT GGCTGGAGGC TGCACGCGCC ACCGGCGACG TCCCCGAGAG CGTCAAGCTG
ATGCCCACCG TGGCCAACCC CGAATATGCC TCGCTGTCGC GCATCCTGAT CGGTATCACC
GTGCTGGCGG CGATCCTGGT GATCGCACGC TATGCCAGGG GCTTCGTCGC CAATATCGCG
GTGCTTCTGG GCATCGTCAT CGGCGGGCTG CTGGCCGCGG TCATGGGCAT GATGCATTTC
GACGGCATCG CCGAGGCTGC CTGGTTCGCA CCGATCAAGC CCCTGCATTT CGGCATGCCG
ATCTTTGACC CGGTGATGAT CCTGACCATG CTGCTGGTCA TGTTCGTGAC CATGATCGAG
TCCACCGGCA TGTTCCTGGC GCTCAGCGAC ATCTGCGGCC GCAGGATGAC GCCCAAGGCG
CTCAGCGCCG GGTTGCGCGT GGACGGCCTG GGCACTGCCA TCGGCGGGCT CTTCAACACC
TTCCCCTATA CGTCCTTCAG CCAGAACGTC GGCCTGGTGG GTGTGACCGG CGTGCGCTCG
CGCTTCGTCT GCGTGGCGGG CGGCGCGATC ATGATCGTGC TCGGCCTGAT CCCCAAGATG
GGCGCGCTGG TCGAATCGCT GCCGACCACG GTGCTGGGCG GCGCGGGGCT GGTGATGTTC
GGCATGGTCG CCGCGACGGG CATCCGCATC CTCTCGACGG TGGACTTCAA GGGCAACAAG
CACAACCTGT TCATCGTCGC CGTCTCGCTG GGCCTCGGCA TGGTCCCGAT GATCGCGCCC
GACTTCAACC AGTGGCTGCC GCATTCGCTG CATACGCTGA TCCATTCGGG CATCCTGCTG
GCCGCGGTCG CCGCCGTTCT GCTGAACTGG TTCTTCAACG GCGCCCCGCA TGCGAGCGAC
GAGGAAATCG CCGCAGCAGC CCACGCAGCC GAGGCGCATT GA
 
Protein sequence
MQAVDTNPGF DPVEERIAAP RLLALGFQHV LVMYAGAIAV PLIVGRALQL SPQDVAFLIS 
ADLFVCGIVT IIQSFGATQW FGIKLPVMMG VTFAAVGPMV AIASSNPGQE GARMMFGAIM
AAGIISIFFA PLVSRLLRFF PSVVTGTVIL VIGVSLMPVG INWIFGLPVG PTAPQLVDPA
AQAWLEAARA TGDVPESVKL MPTVANPEYA SLSRILIGIT VLAAILVIAR YARGFVANIA
VLLGIVIGGL LAAVMGMMHF DGIAEAAWFA PIKPLHFGMP IFDPVMILTM LLVMFVTMIE
STGMFLALSD ICGRRMTPKA LSAGLRVDGL GTAIGGLFNT FPYTSFSQNV GLVGVTGVRS
RFVCVAGGAI MIVLGLIPKM GALVESLPTT VLGGAGLVMF GMVAATGIRI LSTVDFKGNK
HNLFIVAVSL GLGMVPMIAP DFNQWLPHSL HTLIHSGILL AAVAAVLLNW FFNGAPHASD
EEIAAAAHAA EAH