Gene Pden_3900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3900 
Symbol 
ID4582451 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1034669 
End bp1035214 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content65% 
IMG OID639771209 
Producthypothetical protein 
Protein accessionYP_917662 
Protein GI119386607 
COG category[S] Function unknown 
COG ID[COG3816] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.114981 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGAAA AGACTGACAA TGCCGTGAGC GATGCGGCCG GAATCGCCGC TGCCGCCAGC 
CGCGCCTCGA AGAAGGGGCC GCCGCCTGTG CATCTGTGGA ACCCGCCCTT TTGCGGCGAC
CTGGACATGG AGATCCGCGC CGACGGCAGT TGGTTCTACA ACGGCACGCC CATCGGCCGG
CCCGAGATGG TGCGGCTTTT CGCCTCGATC CTGAAGCGCG AGGGGGATGA TTACTTCCTG
GTCACCCCCG TCGAAAAGGT CGGCATCCGC GTGGTCGATG CGCCCTTCAT CGCCGTCGAT
GCCGAAATCG GCGAGGACAT CGTCTTTACC ACCAATGTGG GCGACCGGGT GAGCGCAGGT
CCCGGGCATG AGATAGAAAT GCGCGGGACG CCGGAAGAGC CCCGGCCCTA TGTCCATATC
CGCCGCGGTC TTTGGGCGCT GATCGACCGC AAGACGTTCT ACCGACTGGC CGATGCGGCT
ATGCCCGGCG ACAACGGGCG TATGGAAGTG CGATCGGGAG GGACGGTCTT TCCCCTGGAG
CCCTGA
 
Protein sequence
MEEKTDNAVS DAAGIAAAAS RASKKGPPPV HLWNPPFCGD LDMEIRADGS WFYNGTPIGR 
PEMVRLFASI LKREGDDYFL VTPVEKVGIR VVDAPFIAVD AEIGEDIVFT TNVGDRVSAG
PGHEIEMRGT PEEPRPYVHI RRGLWALIDR KTFYRLADAA MPGDNGRMEV RSGGTVFPLE
P