| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3899 |
|---|
| Symbol | |
|---|
| ID | 4582450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1033911 |
|---|
| End bp | 1034666 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639771208 |
|---|
| Product | hydroxypyruvate isomerase |
|---|
| Protein accession | YP_917661 |
|---|
| Protein GI | 119386606 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3622] Hydroxypyruvate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.194463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGAT TTGCCGCCAA CCTGACCTAT CTGTTCACCG AGATGCCCAT ATTGCAACGC
TTTGCCGCTG CAAGGCGTGC GGGCTTTCAC GGGGTCGAGA TCCTGTTTCC CTATGACCTT
GCCGTCAAGG AGCTGGCCCA GGCCGCACAG GCGGCGGGGG TGGAGTTCGT GCTGATGAAC
ACGCCGCCGC CGAACTGGGC CGGCGGGCCG CGCGGCTTTG CCGCCGAACC GGGCAACGAA
TCGCGCTTTC GCGACGATTT CGACCGCGCG CTGCGCTTTG GCCGCGCGCT GGGGGTCAAG
CATCTGCATG TGATGGCCGG CAAGGCCCGG GGTGGATTGG CGCGACGCAC CTTCGTCGCA
AACCTGAAAT GGGCCTGCGC CCGCGATGCC CGGACCAGCC TGACCATCGA GCCGATGAAC
CGCCACGACA TGCCGGGCTA TTTCCTCGAC AGCTTCGATC TGGCGGCTGA GATCATGGAC
GAGGTCGGGG CGCCGAACCT GGGGCTGCAA TTCGACGTCT ATCAGGCGCA GATGATCCAT
GGCGATGCGC TGGCGGTCTG GCAGCGCCAT ACCGGGCGGA TACGGCATGT CCAGATCGCC
GACTGGCCCA GCCGGCACGA GCCGCGGCAG GGCGATATCG ACTTCGCCGA ACTGTTCCGC
GCCATCGACG CTTCGGGATA TCGCGGCTGG GTCGGCGCGG AATACACCCC CCGCAACTCG
ACCGAGGCCG GGCTGCGCTG GCTAAGCCTG GCCTGA
|
|---|
| Protein sequence | MARFAANLTY LFTEMPILQR FAAARRAGFH GVEILFPYDL AVKELAQAAQ AAGVEFVLMN
TPPPNWAGGP RGFAAEPGNE SRFRDDFDRA LRFGRALGVK HLHVMAGKAR GGLARRTFVA
NLKWACARDA RTSLTIEPMN RHDMPGYFLD SFDLAAEIMD EVGAPNLGLQ FDVYQAQMIH
GDALAVWQRH TGRIRHVQIA DWPSRHEPRQ GDIDFAELFR AIDASGYRGW VGAEYTPRNS
TEAGLRWLSL A
|
|---|
| |