| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3878 |
|---|
| Symbol | |
|---|
| ID | 4582429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 1013103 |
|---|
| End bp | 1014599 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639771187 |
|---|
| Product | signal recognition particle protein |
|---|
| Protein accession | YP_917640 |
|---|
| Protein GI | 119386585 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.515054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.639996 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAAA ACCTGTCCGA CCGCCTTGGC GGCGTCTTCG ACCGGCTGAC CAAGCAGGGC
GCGCTGTCCG AGGACGACGT CGCCGCCGCC ATGCGCGAGG TGCGCGTCGC GCTGCTCGAG
GCCGATGTCT CGCTGCCCGT CGCGCGCAAT TTCGTCAAGG CGGTGACGCA GAAGGCCACG
GGAGCCGCCG TCACCAAGTC GATCACGCCC GGCCAGCAGG TCGTGAAGAT CGTCCATGAC
GAGCTGATCA AGGTTCTGCA GGGCGAGGGT GCGCCCGATG CGCTGCGCAT CGACAACCCG
CCCGCGCCGA TCCTGATGGT CGGTTTGCAG GGCTCGGGCA AGACCACCAC CACGGCGAAG
CTGGCCAAGC GCCTCAAGGA TCGCGAGAAG AAGCGGGTGC TGATGGCGTC GCTGGACACC
AACCGCCCGG CCGCCATGGA GCAGCTGGCG ATCCTGGGCC AGCAGATCGG CGTCGATACC
CTGCCCATCG TGCCGGGCGA GAATGCGGTG CAGATTGCGA AACGCGCCAA GCAGCAGGCG
ACGCTGGGCG GCTATGACGT CTATATGCTC GACACCGCCG GCCGGCTGCA TATCGACGAA
GTGCTGATGG ACGAGGTGCA GGCGGTCCGC GACGTGGCCA GCCCGCGCGA GACGCTGCTG
GTCGTCGACG GGTTGACCGG CCAGGACGCG GTGAACGTCG CGGCCGAGTT CGACGGCAAG
GTGGGCATCT CGGGCGTGGT GCTGACCCGG ATGGACGGCG ACGGCCGCGG CGGTGCGGCG
CTGTCGATGC GCGCCGTCAC CGGCAAGCCG ATCCGCTTCG TGGGCCTGGG CGAAAAGATG
GATGCGCTGG AGGCCTTCGA CGCGCAGCGC ATCGCCGGCC GCATCCTCGG CATGGGCGAC
ATCGTGGCCC TGGTCGAGAA GGCGCAGGAG GTGCTGGAGG TCGAGCAGGC CGAGCGCATG
ATGAAGCGCT TCCAGAAGGG CATGTTCAAC ATGAACGACC TGCGGGGCCA GCTTGAGCAG
ATGCTCAAGA TGGGCGGCAT GCAGTCGATC ATGGGCATGA TGCCCGGCAT GGGCAAGATG
GCCAAGCAGG CCGAGGCCGC CGGCTTCGAC GACAAGGCGA TCAAGCGCCA GATCGCGCTG
ATCAACTCGA TGACGAAAAA GGAACGCGCC AATCCCGACC TGCTGCAGGC TAGCCGCAAG
AAGCGCATCG CGGCCGGCGC CGGCATGGAA GTGTCCGAGC TGAACAAGCT TCTGAAGATG
CAGAAGCAGA TGGCCGACAC GATGAAGAAG CTGGGCAAGA TGGGCAAGGG CGGGCTGCTG
AAGCAAGCCA TGCGCGCCAT GACCGGCAAG GGCGGCGGGC TGCCCGACAT GGGCAATGTC
GATCCCGAAA AGATGGCCGA GGCGACCAAG ATGCTGCAGG ACCCCAAGGG GCTGGGTGGG
CAGTTGGGCG GCATGAACCT GCCCGGCGGG CTCTCGGGCC TGTTCGGAAA GAAGTGA
|
|---|
| Protein sequence | MFENLSDRLG GVFDRLTKQG ALSEDDVAAA MREVRVALLE ADVSLPVARN FVKAVTQKAT
GAAVTKSITP GQQVVKIVHD ELIKVLQGEG APDALRIDNP PAPILMVGLQ GSGKTTTTAK
LAKRLKDREK KRVLMASLDT NRPAAMEQLA ILGQQIGVDT LPIVPGENAV QIAKRAKQQA
TLGGYDVYML DTAGRLHIDE VLMDEVQAVR DVASPRETLL VVDGLTGQDA VNVAAEFDGK
VGISGVVLTR MDGDGRGGAA LSMRAVTGKP IRFVGLGEKM DALEAFDAQR IAGRILGMGD
IVALVEKAQE VLEVEQAERM MKRFQKGMFN MNDLRGQLEQ MLKMGGMQSI MGMMPGMGKM
AKQAEAAGFD DKAIKRQIAL INSMTKKERA NPDLLQASRK KRIAAGAGME VSELNKLLKM
QKQMADTMKK LGKMGKGGLL KQAMRAMTGK GGGLPDMGNV DPEKMAEATK MLQDPKGLGG
QLGGMNLPGG LSGLFGKK
|
|---|
| |