Gene Pden_3800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3800 
Symbol 
ID4582351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp936241 
End bp937833 
Gene Length1593 bp 
Protein Length530 aa 
Translation table11 
GC content66% 
IMG OID639771109 
Productextracellular solute-binding protein 
Protein accessionYP_917562 
Protein GI119386507 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.129084 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGACGA TTTCGGGACT TCGCGCCCTT GGATGGGCCG CCATGGCGGC GGGTTTGCTC 
CACGCCGGGC CGGCTTCGGC CGAGACGGTG CTGAACGTGG TGATGCAGGC GCCGCTGCGC
ACGCTGGATC CGCATCTGAG CACGGCGCAG ATCGTGCGGA CGCATGGTTT CATGGTCTTC
GACACGCTTC TGGGCATGGA TGCGGATTAC AAGCCGCAGC CGCAGATGGC GGATTACCAG
GTTTCGGACG ACGGGCTGAC CTATACCTTC ACCCTGCGCG ACGGGCTGAC ATGGCATGAC
GGCAGCCCGG TCGCGGCCGA GGATTGCGTC GCCTCGCTGA AACGCTGGGC CGAGAACGAT
CCGGCCGGGC GCAAGATGAT GGAATATGTC GCCTCGATCG AGACGACCTC GGACAAGGTG
CTGGTGCTGA CGCTGGCCCG TCCCTTCGGC CATGTGCTGG ACCTGCTGGC CAAGCCTTCG
CCGGTGCCGC CCTTCATGAT GCCCAAGCGC CTGGCCGAGA CGCCCTCGGG CGAGCAGGTG
GCCGAGATGG TCGGCTCGGG CCCGTTCAAG TTCGTCGCCG AGGAATACCG GCCCGGCGAT
CAGGCGGTCT ATGTCAGGAA CGAGGATTAC CAGCCGCGCC CCGAGCCGGC CAGCTGGACC
GCCGGCGGCA AGGTGGTGAA TGTCGACAAG GTGGTGTGGA AGGCGATGCC GGACATGCAG
ACCTCGATCA ACGCGCTGCA ATCGGGCGAT GTGGATCTGA TCGAGCAGGT GACCATCGAC
CTGCTGCCCC TGCTGCAAAT GAACGACGAG GTGGAATACG GCGTCATCAA CCCGCTGGGC
AGCCAGGTCA CGGGGCGCTT CAACCACCGA CTGCCGCCCT TTGACGATGC CGAGATCCGC
CGCGCCGCCA TGTATGCGCT GGATCAGGAG CAGTTGATGC AGACCGCCAT CGGCGACCCG
GAATACTACA CGCTCTGCGC CTCGGATTAC GGCTGCGAGG TGCCGCTGGC GTCGGATGCC
GGCTCGGAAT ACCTGGCCGG CAGCGCCGAG GAGCGCATGG CCAAGGCGCA GGAGATCCTG
AAGGCCGCAG GCTATGACGG AACCCCGGTG CTGATGATGC AGCCGACCGA CCTGACCATC
CTGTCCACCC AGCCCATCGT CGCCGCCGAG CGGCTGCGCG AGGCCGGCTT TGCGGTCGAG
GTCGCCTCGA TGGACTGGGC CACGCTGCAA TCGCGCAAGA ACGGCTGGCA GCCGGTGGCC
GAGGGCGGCT GGAACATGCT CTTTACCTAT TGGGGCGTGA CCGGGATCTG GAACCCGCTG
GTCCATGCGC TGCTGGATGG CTCGGGCAGC GACAACGCCT GGTCCGGCTG GCCGGTCAGC
CCCGAGATCG AGGCGCTGCG CGAGCAGTAT CTGGTCGCCA CCGACCTGGA CGAGCAAAAG
CGCATCGCCG CCGAGATCCA GCAGATCGCC TATGACCAGG GCTTCTACTA CAATGCCGGC
GAGTTCCAGT CGGTCGCCGC CTGGCGGGAC GGGATCACCG AGCTGCAACC CGGTCCGATC
ACCCTGTTCT GGGGCGTGAA GAAGCCCGAA TAA
 
Protein sequence
MMTISGLRAL GWAAMAAGLL HAGPASAETV LNVVMQAPLR TLDPHLSTAQ IVRTHGFMVF 
DTLLGMDADY KPQPQMADYQ VSDDGLTYTF TLRDGLTWHD GSPVAAEDCV ASLKRWAEND
PAGRKMMEYV ASIETTSDKV LVLTLARPFG HVLDLLAKPS PVPPFMMPKR LAETPSGEQV
AEMVGSGPFK FVAEEYRPGD QAVYVRNEDY QPRPEPASWT AGGKVVNVDK VVWKAMPDMQ
TSINALQSGD VDLIEQVTID LLPLLQMNDE VEYGVINPLG SQVTGRFNHR LPPFDDAEIR
RAAMYALDQE QLMQTAIGDP EYYTLCASDY GCEVPLASDA GSEYLAGSAE ERMAKAQEIL
KAAGYDGTPV LMMQPTDLTI LSTQPIVAAE RLREAGFAVE VASMDWATLQ SRKNGWQPVA
EGGWNMLFTY WGVTGIWNPL VHALLDGSGS DNAWSGWPVS PEIEALREQY LVATDLDEQK
RIAAEIQQIA YDQGFYYNAG EFQSVAAWRD GITELQPGPI TLFWGVKKPE