| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3558 |
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| Symbol | |
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| ID | 4582113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 709730 |
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| End bp | 710731 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639770871 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_917324 |
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| Protein GI | 119386269 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.437109 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.427053 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGACA ATAAATCCAT CCTGATTACA GGCGGGACCG GCAGCTTTGG CAAGAAGTAT
GTCCAGACGC TGCTGTCGCG GTTCAAGCCC CGAAAGATCA TTGTCTTCTC GCGCGACGAA
CTGAAGCAGT TCGAGATGCA GCAGAAGTTC AACGATCCCT GCATCCGCTA CTTCATCGGC
GACGTGCGCG ACCGCGAGCG GGTGCTGCAG GCGACGCGCG GGGTGGATTA CATCATCCAT
GCCGCTGCAT TGAAACAGGT GCCGGCGGCG GAATACAACC CCGTCGAATG CATCAAGACC
AATATCGACG GGGCGCAAAA CGTCATCCAT GGCGCCATCA CCAACAATGT CGAGAAGGTG
ATCGCGCTTT CGACCGACAA GGCGGCGAAC CCGATCAACC TCTATGGCGC GACCAAGCTT
GCCTCGGACA AGCTCTTCGT CGCCGCGAAC AACATGGTGG GCGAACGCCG GACCCGTTTC
GCCGTGGTGC GCTACGGCAA TGTCGTGGGC TCGCGCGGTT CGGTCGTGCC GTTCTTCCAG
GGGCTGATCG ACCAGGGCGC GAAAAGCCTG CCGATCACCG ATACCGACAT GACCCGCTTC
TGGATCTCGC TCCAGCAAGG GGTGGATTTC GTGCTGAAGA ACTTCACCCG CATGCATGGC
GGCGAGATCT TCGTGCCGAA GATCCCCTCG GTGCGCATCG TCGACCTGGC CCGCGCCATG
GCGCCGGGGC TTGAACAGCA TGTGATCGGC ATCCGCCCCG GCGAAAAGCT GCACGAAATC
ATGTGCCCGG CCGATGACAG CCACCTGGCC GTCGAATACG ATGACCATTT CGTGCTCTCG
CCCTCGATCC GCTTCTACGA TCACGACGTG GACTATTTCT CGAACGGCAT CGGCGAGTCC
GGCAAGGCCG TGGGGCGTGG CTTCGAATAC AATTCGGGCA CCAACACCCA CTTCCTGAGC
GTGGACGAGA TCGTGGAGTT CAACGCGAAG GCCATGGCAT GA
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| Protein sequence | MFDNKSILIT GGTGSFGKKY VQTLLSRFKP RKIIVFSRDE LKQFEMQQKF NDPCIRYFIG
DVRDRERVLQ ATRGVDYIIH AAALKQVPAA EYNPVECIKT NIDGAQNVIH GAITNNVEKV
IALSTDKAAN PINLYGATKL ASDKLFVAAN NMVGERRTRF AVVRYGNVVG SRGSVVPFFQ
GLIDQGAKSL PITDTDMTRF WISLQQGVDF VLKNFTRMHG GEIFVPKIPS VRIVDLARAM
APGLEQHVIG IRPGEKLHEI MCPADDSHLA VEYDDHFVLS PSIRFYDHDV DYFSNGIGES
GKAVGRGFEY NSGTNTHFLS VDEIVEFNAK AMA
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