| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3539 |
|---|
| Symbol | |
|---|
| ID | 4582094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 687446 |
|---|
| End bp | 688756 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639770852 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_917305 |
|---|
| Protein GI | 119386250 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.248522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGTC TTGAAATCGG CTTAGCCGGC GTTGCGGCCA TCCTGCTTCT GATCGGCATC
CGCGTGCCCA TCGGGGTGGC CATGGGCTCG ACTGCTTTCT TCGGCATCTG GGCCATGATG
GGATTGAAGC CCGCCATCGG CATCACCAAG GCCATCCCGT TCAACCTGAT CGGCGACTGG
AACCTCTCGG CGATCCCCAT GTTCCTGTTC ATGGGCTTTG TCGCGGTCGA GGCCAGGCTG
ACCCGCGGCC TGTTCGGTGC GGCCCGCATC TTCCTGGCGC GCATCCCCGG CGGGCTTGCC
TCATCGACCG TCTTCGCATC GGCCCTGTTC GGCGCGGCGA GCGGGTCGAG CGTTGCGACC
TCGGCCGCCT TTTCGCGCAT CGCCGTGCCC GAGATGCTGG ACAGCAAATA CAATCCCGGC
CTTGCGACGG GTGCCGTCGC GGCCTCGGGC ACGCTGGCCG CGCTGATCCC GCCCTCGGTG
CTGATGATCG TCTATTGCCT GCTGGTCGAC ACCTCGATCA ACACGCTGTT CATGGCCGGC
GTGATCCCCG GCATCCTGAC GGCGACGGCC TTCATCCTGA TGATCACCAC GCGCTGCATG
CTGAATCCGG GGCTTGCCCC CCGCTATGTC GACCACACGA CGCGCGCCGA AAAGATCGCC
CTGCTGCGCG ATGCGTGGCC GCTGCCCCTG GTGACGTTCA TCGTGATGGG CGGCATCTTT
ACCGGCGCCT TCACGGCCAC GGAATCCGGC GCCGTCGGTG CCTTCCTGGC CTGCCTGATC
GCCCTCGCGC GCGGCAGGAT GAACCTTGCC ATGCTGAAGC GGTCGATCAT CGACACCGCA
GCCGGCACCT CGGCCATCTT CATGATCGTG CTGGGCGCGG CGCTTTTCGC GCGCTTCATC
GCGCTCGCGA CCATTCCGAC CTGGGTGATG GGCTTCTTCG ACGGCTACAG CGCCATGACC
GTGGTGATCC TGATCTGCAT CATCCTGGTG CTGATGGGAA CCTTCATGGA GGAAATCTCG
ATCATGCTGC TGACCATGCC GGTGCTGGCG CCCCTGCTGG CGCAGCATGG CATCGACCTG
ATCTGGTTCG GCATCCTGGT CATCAAGCTG ATGACCATCG GCCTGATCAG CCCGCCGGTC
GGCATGAATG TCTTCGTGAT CAAGACGTCG CTCGGCAACA GAGTCACGCT GAACCAGATC
TTCGGCGGCG TGACCTGGTT CATCATGGTC GACCTGCTGG TCCTGGCTGC CCTGATCGCC
TTTCCGCAGA TCAGCCTCTG GCTGCCGGGA ATGATGACCA CCACCCGCTG A
|
|---|
| Protein sequence | MERLEIGLAG VAAILLLIGI RVPIGVAMGS TAFFGIWAMM GLKPAIGITK AIPFNLIGDW
NLSAIPMFLF MGFVAVEARL TRGLFGAARI FLARIPGGLA SSTVFASALF GAASGSSVAT
SAAFSRIAVP EMLDSKYNPG LATGAVAASG TLAALIPPSV LMIVYCLLVD TSINTLFMAG
VIPGILTATA FILMITTRCM LNPGLAPRYV DHTTRAEKIA LLRDAWPLPL VTFIVMGGIF
TGAFTATESG AVGAFLACLI ALARGRMNLA MLKRSIIDTA AGTSAIFMIV LGAALFARFI
ALATIPTWVM GFFDGYSAMT VVILICIILV LMGTFMEEIS IMLLTMPVLA PLLAQHGIDL
IWFGILVIKL MTIGLISPPV GMNVFVIKTS LGNRVTLNQI FGGVTWFIMV DLLVLAALIA
FPQISLWLPG MMTTTR
|
|---|
| |