Gene Pden_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3500 
Symbol 
ID4582055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp645946 
End bp646842 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content66% 
IMG OID639770813 
ProductLysR family transcriptional regulator 
Protein accessionYP_917266 
Protein GI119386211 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.963487 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0497689 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAGC TCAAAGCCCT GAAGACCTTT CTGCTGGCCG CGGAAAAGCG GAACTTCGCG 
CAGGTCGCGC GGGAACTGGA CATGACCCCG GCCTCGGTCA CGCGCACCAT CGCGGCACTC
GAGGACATGC TGGGCGTGCA GCTTTTCGTG CGCACGACGC GGCAGGTCTC GCTAACGGGG
GACGGGGCGA TCTTCGCCTC GCGCATCGAG CAGGCCGTCG AGGCGCTGGA GGCCGCGCGC
ACGGAAATGG CCAATGCACA CAAGGCCGAC GAGGGCCGGC TGCGCATCAA TGCGCCGATG
TCGCTGGGGC AACGGGTGCT GCCGCAGATC CTGTGCGGCT TTCGCGACCT TTATCCCAGG
ATCGACGTGG AGATCCGGCT GACCGACCGT TTCCTCGACA TGGTCGAGGA GGATTTCGAC
CTGGCGATCC GCATCTCCGC CGCGCCTTCG GACAAGTTCA CGATCTGGCG CAAGATCTGC
CCGGTCAAGC GCTTGCTGGT CGCGGCGCCG GGCACGCCGC ATGCCGAGGT CAAGCATCCC
AACGAGTTGT CGCCCGGCGA TTGCCTGGCC TACAGCGCGG ACAGTCACCG GGAAAACTGG
CAGCTCTCGG ACGGGAATGC CTCGGTCACC ATCGCGGCGG GGCGGTCCAT CAGCGCGAAT
AACGGCGATC TGCTGGCGCA TATGGCGGCC GATGGCGCGG GCGTGGTGCT GCTGCCGGTC
TTCATCCTGG CGCAATACCT GCGCAGCGGG CGGCTGGTGC AGATCCTGCC CGACTGGACG
CCGCCGCAGA TCTGGCTGAC GCTCTATTAT CCGCCCTACC AGAAGCTGCC GCCCAGGATC
GCCGCGTTCT CGGATTTCTT CGAGCGTCAG ATCCCCGCAC TGGTCACCAC GCTATGA
 
Protein sequence
MNELKALKTF LLAAEKRNFA QVARELDMTP ASVTRTIAAL EDMLGVQLFV RTTRQVSLTG 
DGAIFASRIE QAVEALEAAR TEMANAHKAD EGRLRINAPM SLGQRVLPQI LCGFRDLYPR
IDVEIRLTDR FLDMVEEDFD LAIRISAAPS DKFTIWRKIC PVKRLLVAAP GTPHAEVKHP
NELSPGDCLA YSADSHRENW QLSDGNASVT IAAGRSISAN NGDLLAHMAA DGAGVVLLPV
FILAQYLRSG RLVQILPDWT PPQIWLTLYY PPYQKLPPRI AAFSDFFERQ IPALVTTL