| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3448 |
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| Symbol | |
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| ID | 4582004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 589521 |
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| End bp | 592625 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639770762 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_917215 |
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| Protein GI | 119386160 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGTT TCTTCATTCA CCGCCCCGTC TTCGCTTGGG TTCTGGCCAT CATCACCATG
CTGGCCGGGG TCTATGGCCT GTCCAGCCTG CCCATCGCGC AATATCCCGA CATCGCGCCC
ACCACGGTCA GGATCAGCGC CACCTATACC GGCGCCTCGC CCGACATCGT CGAGAACTCG
GTGACCTCGA TCATCGAGGA CGGCATGACC GGCCTTGATG GGCTGATCTA CATGACCTCG
ACCTCGTCTC AGGGCTCCAG TTCGATCCAG CTTACCTTCG ACGACAGCGT GGACCCGGAC
ATCGCCCAGG TGCAGGTGCA GAACAAGCTG CAACTGGTGA CCTCGCAACT GCCCGAATCG
GTGCAGAGCA AGGGCGTCTC GGTCAGCCGC TCGACCTCGT CCATCCTGCT GGTGGGGGCG
CTGACCTCGA CCGACGGCAG CTATTCCTCG CTGGAACTGG GCGATCTGGT CGCGCAGGTG
ATCGAAAACC CGGTCAAGCG CACCGCCGGC GTCGGCTCGA TCAACAGCTT CGGCTCGGGC
TATGCGATGC GGATCTGGCT GGATCCCGAC CGGATGCTGC AATATCAGGT CACGCCCTCG
GACGTGGTCT CGGCCGTCAG CGAGCAGAAC ACCAACGTCA CCCTGGGCAG TCTCGGCAGC
CAGCCCACGG TCAAGGGCCA GCAGTTGAAC GTGGCGCTTT CGGCGCAGTC GCAGCTGACC
TCGGTGCGCG AATTCGAGCG TATCCTGCTG CGCACCGACA GCGACGGCGC CACGATCTTT
CTGGGCGACG TGGCCGATAT CGAGATCGGG CAGGAGGATT ACGGCTCGTC CTCGCGCTAC
AACGGCATGC CCGCCGCCGG GTTCGGCGTG AACCTGGCCA CGGGCGCGAA CGCCGTGGAC
ACGGCCGAGG CGGTGCGCGA GGTGCTGGAC GGGCTGCAAT CCTCGCTGCC GGCCGGAGTG
CAGATCGTCT ATCCCTACGA CACCTCGCCC TTCGTCGAGG AATCCATCAA CCAAGTCTAT
CACACGCTGA TCGAGGCGGT GGTGCTGGTC TTCCTGGTCA TCCTGGTCTT TCTGCAAAGC
TGGCGCGCGA CGCTGATCCC GACGCTGGCG ATCCCGGTGG TGCTCTTGGG CACCTTCGGG
GTGCTGTCAT TCGCCGGCAT GTCGATCAAC ACGCTGACCA TGTTCGCGAT GGTGCTGGCC
ATCGGCCTTC TGGTGGACGA CGCCATCGTC GTGGTCGAGA ACGTCGAGCG GGTGATGGAA
GAGGAAAGCA TCGGCCCGGT CGAGGCGACC GAGAAGAGCA TGGACGAGAT TTCGTCGGCT
CTGGTCGGCA TCGTGCTGGT GCTGTCGGCG GTGTTCCTGC CGATGGCCTT CATGTCCGGC
TCGACCGGGG TGATCTATCG GCAGTTCTCG GTCACCATCA TCACCGCCAT GGTCCTGTCG
CTGGGCGTCG CGCTGATCCT GACGCCGGCC ATGTGCGCAA CGCTGCTGAG GCCGCGCGGC
CATGGCGACG GCATCGCGCC CGCGCGATGG TTCAACCGCA ACCTGGACCG GGCCACGAAC
GGCTATGCCG GCGCGGTCGG CGCTTTTGTG CGCCGGCCCT TCCGCTTCCT GGTCGTGCTG
CTGGCCTTTG GTGCCGGGGC ATACATGCTT TACCAGAAAC TGCCCGGCTC TTTCCTGCCG
TCCGAGGACC AGGGCGTGCT GATGGTCATG GTCGAAACCC CCGAGGGCTC GACTGCCGAA
CGCACCCGCG CGCTGGTCGA GGAGGTCGAG CAATATGTGC TCGGCACCGA GAAGGACACC
GCCGAGAGCG TCTTTGCCGC GCTTGGCTTC GGCTTCGGCG GCTCGGGTCC GCGCAACGCG
ATGATCTTCG TCAAGCTCAA GGATTTCGAG CTGCGCGAGG GCTTCGATGC CGCATCCATG
GCGACGCGCG GCAACCTGCG CTTCATGGAG AACCGCAACG GGCAGGTCTT CTTCATGCAG
CCGCCCGCCA TCCAGGGCAT GGGCAATACG GCCGGCTTCA CCATGCACCT GATCGACCAG
TCCGGCCATG GGCAGGAGGC GCTGGCCGCA GCTGCCGACG AATTGGTGGA AAAGGCCACG
GCGGATGGCC GCGTCACCAG CCTGCAAGGC AATGACGCGC CATTCGAGAC CTCGCGCCGG
ATCGACATCG ACCAGCAGAA GGCGGCGGCC TACGGCCTGT CGATCTCGGA CCTGAACACG
ACGCTGTCGG TGATCTTCGC CAGCGCGAAC GTGAACGATT TCTCGCTGGG CACCGAACTG
CGCCCCGTCA TCGTCCAGGG CAAGGCCGAG GCGCGGATGC AGCCCGACGA CATCGAGAAA
TGGTATGTCC GCAACACCGC AGGCGACATG GTGCCCTTTA CCGCCTTCAC CGCGCAGGAC
TGGGACCAGC AGGCGCAGAG CCTTGCCCGC TATGGCGGCA CCCGTTCGCT GGAGGTCACC
GGCGCGCCGG CGCAGGGCGT CTCGTCCGGC ACGGCGATGG AGGTGATGGA GGAGCTGGTC
GCCGGCATGG ATGGCGGCTA CGGCACCGCC TGGACCGGGC TTTCCTATCA GGAGCGGCTG
TCGGGCAGCC AGGCGCCGAT GCTGTTCGCG CTTTCGGCGC TGGTGGTGTT CCTGGCGCTG
GCGGCGCTTT ACGAAAGCTG GTCGGTGCCG CTTTCGGTGA TGATGACCGT GCCCATCGGC
ATCGTCGGCG CCATGGCGGC GGCGCTGGTC TTCGACCAGT CGAACGACGT CTATTTCAAG
GTCGGCCTGC TGACGACCAT CGGCCTTGCC GCGCGCAACG CCATCCTGAT CGTGGAATTC
GCCCAGCAGT TGCACGGACA TGGCAAGCCG CTGCTGGAGG CGGCGGTCGA GGCCTCGCGC
ATGCGGCTGC GCCCGATCCT GATGACGACG CTCGCCTTCA TGCTGGGCGT TCTGCCCCTG
GCGCTGGCCA GCGGCGCGGG CGCGGCGGCG CAGCAATCCA TCGGCATCGG CGTGCTGGGC
GGCATCACGG CCTCGGCGGT GATCGGCATC TTCCTCGTCG CCGTCTTTTA CGTCGCGGTC
CTCAGGGCCG TGCAGCATTT CACCAACAAG AGAGCCAAGA CGTGA
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| Protein sequence | MARFFIHRPV FAWVLAIITM LAGVYGLSSL PIAQYPDIAP TTVRISATYT GASPDIVENS
VTSIIEDGMT GLDGLIYMTS TSSQGSSSIQ LTFDDSVDPD IAQVQVQNKL QLVTSQLPES
VQSKGVSVSR STSSILLVGA LTSTDGSYSS LELGDLVAQV IENPVKRTAG VGSINSFGSG
YAMRIWLDPD RMLQYQVTPS DVVSAVSEQN TNVTLGSLGS QPTVKGQQLN VALSAQSQLT
SVREFERILL RTDSDGATIF LGDVADIEIG QEDYGSSSRY NGMPAAGFGV NLATGANAVD
TAEAVREVLD GLQSSLPAGV QIVYPYDTSP FVEESINQVY HTLIEAVVLV FLVILVFLQS
WRATLIPTLA IPVVLLGTFG VLSFAGMSIN TLTMFAMVLA IGLLVDDAIV VVENVERVME
EESIGPVEAT EKSMDEISSA LVGIVLVLSA VFLPMAFMSG STGVIYRQFS VTIITAMVLS
LGVALILTPA MCATLLRPRG HGDGIAPARW FNRNLDRATN GYAGAVGAFV RRPFRFLVVL
LAFGAGAYML YQKLPGSFLP SEDQGVLMVM VETPEGSTAE RTRALVEEVE QYVLGTEKDT
AESVFAALGF GFGGSGPRNA MIFVKLKDFE LREGFDAASM ATRGNLRFME NRNGQVFFMQ
PPAIQGMGNT AGFTMHLIDQ SGHGQEALAA AADELVEKAT ADGRVTSLQG NDAPFETSRR
IDIDQQKAAA YGLSISDLNT TLSVIFASAN VNDFSLGTEL RPVIVQGKAE ARMQPDDIEK
WYVRNTAGDM VPFTAFTAQD WDQQAQSLAR YGGTRSLEVT GAPAQGVSSG TAMEVMEELV
AGMDGGYGTA WTGLSYQERL SGSQAPMLFA LSALVVFLAL AALYESWSVP LSVMMTVPIG
IVGAMAAALV FDQSNDVYFK VGLLTTIGLA ARNAILIVEF AQQLHGHGKP LLEAAVEASR
MRLRPILMTT LAFMLGVLPL ALASGAGAAA QQSIGIGVLG GITASAVIGI FLVAVFYVAV
LRAVQHFTNK RAKT
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