Gene Pden_3407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3407 
Symbol 
ID4581963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp551486 
End bp552592 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content66% 
IMG OID639770721 
ProductABC transporter related 
Protein accessionYP_917174 
Protein GI119386119 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3839] ABC-type sugar transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.938763 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGATCC TCGAAATCGA CCATCTGCAG AAAGCCTATG GCGACACGCA TATCCTGCAT 
GACATCAACA TCAGCATAGA GCCGGGCGAT TTCCTGGTCC TTGTCGGTCC CTCGGGCTGC
GGCAAGTCCA CCTTGCTCAA CTGCATCGCC GGGCTGGAGC CGATTACCGG CGGCACCATC
CGCATCGGCG GGCGCGACGT GACCGGCGTG TCGCCCAAGG ACCGGGACAT CGCCATGGTG
TTCCAGTCCT ATGCGCTTTA CCCGACGATG AGCGTCGCCA GGAACATCAC CTTCGGGATG
CAGGTGCGCG GCGTGGACAA GGCCACGCAG GCCGCGAAAC TGGCCGAGGT CGCCCGGCAA
CTGCAGATCG AGCCGCTCTT GGCCCGCAAG CCCGGCCAGT TGTCGGGAGG GCAGCGCCAG
CGGGTGGCGA TGGGCCGGGC GCTGGTGCGC GATCCCAAGC TGTTCCTGTT CGACGAGCCG
CTGTCCAATC TGGACGCCAA GCTGCGCGTG TCCATGCGGA CCGAGATCAA GAAGCTGCAC
CAGGATCTGA ACGCCTCGAT CGTCTATGTC ACCCATGACC AGATCGAAGC AATGACGCTG
GCCACCAAGA TCGTCGTGAT GAAGGGCGGC GTGATCCAGC AGATCGGCGC TCCGGCGGAA
ATCTACAACC GCCCGGCCAA CATGTTCGTG GCCGATTTCA TGGGCAGCCC GGCGATGAAC
CTGATCCCGG CGCAGGTGCG CTCCGAAGGC GGCCAGACCC GCATCGAGAT TGCGCGCGAG
GGTGCGGCGC CGCTGGTCAT CACCGACCCG GTGGCGCGCC AGCTTCCGGC CGAGATCGTC
CTGGGCGTCC GTCCCGAGGA TATCCACGAA GCGACCGGCA GCGCCCATCT GCCGGGGCTG
GCGCAGGGCG CGGGCGGCGA GGTGATGATC GAGATCGTCG AGCCTGCGGG CGCGGATACC
TTTGCCGTCA CCCATCTGGG CGGCAAGCCG GTCACGGCGC GGCTGCGCGC GGAAAGCGCG
GTTCGGGCGC GGGCGATGTT TCCGCTCGCC TTCGACCTCT CGAAAGTGTC CTACTTCTCG
CCCGAGAACG GAGAGCGGTT GAACTAG
 
Protein sequence
MPILEIDHLQ KAYGDTHILH DINISIEPGD FLVLVGPSGC GKSTLLNCIA GLEPITGGTI 
RIGGRDVTGV SPKDRDIAMV FQSYALYPTM SVARNITFGM QVRGVDKATQ AAKLAEVARQ
LQIEPLLARK PGQLSGGQRQ RVAMGRALVR DPKLFLFDEP LSNLDAKLRV SMRTEIKKLH
QDLNASIVYV THDQIEAMTL ATKIVVMKGG VIQQIGAPAE IYNRPANMFV ADFMGSPAMN
LIPAQVRSEG GQTRIEIARE GAAPLVITDP VARQLPAEIV LGVRPEDIHE ATGSAHLPGL
AQGAGGEVMI EIVEPAGADT FAVTHLGGKP VTARLRAESA VRARAMFPLA FDLSKVSYFS
PENGERLN