Gene Pden_3404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3404 
Symbol 
ID4581960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp548443 
End bp549684 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content67% 
IMG OID639770718 
Productextracellular solute-binding protein 
Protein accessionYP_917171 
Protein GI119386116 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATGA AACCCCTTCT GGCGGCGTCG ACCGCCGTGA TGCTGGCCGG GCCGGTGCTG 
GCCGAGCCGC AGGCCGAAGT GCTGCACTGG TGGACCTCGG GCGGCGAGGC GCGCTCCGTC
GCGGTGCTGC AAGAGCAGTT CGCAGCCGAG GGCGGCAGCT GGACCGACAT GCCCGTGGCG
GGCGGGGGCG GCGACGCAGC AATGACCGCG CTGCGCGCCC GCGTGCTGTC GGGCAATGCG
CCGACCGCCG TGCAGTTGAA AGGCCCGGCC ATTCAGGAAT GGTACGAGGA AACCGGGCTG
GCCGATATCG GTCCCGTGGC CGAGGAAAAC GGCTGGGAAG CCGTCCTGCC CGTCCGCATC
GCCGAGCACA TGCAATGCGA AGGCCAATGG TGCGCCGCGC CGGTGAACGT CCATCGCGTG
AACTGGATCT GGGGCAACAA GCAGATCCTG GACGAGCATG GCATAGCGAT GCCGACCACA
TGGGAGGAGT TCAACGCCGC TGCCGAGACG CTGAAGGCGG CGGGCGTGAC GCCTCTGGCC
CATGGCGGGC AAAGCTGGCA GGACGCGACC GTGTTCGAGA CCGTCGTCCT GGGCCTGGGC
GGGCCGGAAT TCTACCAGCA GGCGCTGGTC GACCTGGACC CTCAGGCGCT GAACTCGGAT
ACCATGCGCC AGGTGTTCGA CCAGATGCGG GTGATCCGCG GCTATGTGGA CGACAATTTC
TCGGGGCGCG ACTGGAACCT CGCGACCGCG ATGGTGATGA ACGGCGAGGC CGCCTTCCAG
ATCATGGGCG ACTGGGCCAA GGGCGAGTTT CTGGCCGCCG ACAAGAAGCC GGGCGTGGAT
TTCGTCTGTG CCGAGACGCC CGGCGGCGGG TTCCTCTACA ACGTCGACAG CTTCGCCTTC
TTCAAGGTCG ATGGCGATGA CCGCCAGCAG GGGCAGGCGC TGCTGGCCCG CCTGATCATG
GGCGAGGGCT TCCAGAAGAC CTTCAACCTC AACAAGGGCT CGATCCCCGC GCGCACCGAC
GTGGCACTGG ACGAGTTCGA CGATTGCGCC CGGCAATCGG CCGAGGCGAT GAATGCGGGT
GCGGAAAACG GTTCCCTGCT GCCCTCCTAT GCGCATGGCA TGGCGCTGCG CGGCGCGCCC
GCCGGGGCGA TCACCGATGT GGTGACGGCG CATTTCAACA GCGACATGAC CTCGGACGAG
GCCGTGGAGC AACTGGCCAA CGCCGTCGCG AGCGCGATGT AA
 
Protein sequence
MTMKPLLAAS TAVMLAGPVL AEPQAEVLHW WTSGGEARSV AVLQEQFAAE GGSWTDMPVA 
GGGGDAAMTA LRARVLSGNA PTAVQLKGPA IQEWYEETGL ADIGPVAEEN GWEAVLPVRI
AEHMQCEGQW CAAPVNVHRV NWIWGNKQIL DEHGIAMPTT WEEFNAAAET LKAAGVTPLA
HGGQSWQDAT VFETVVLGLG GPEFYQQALV DLDPQALNSD TMRQVFDQMR VIRGYVDDNF
SGRDWNLATA MVMNGEAAFQ IMGDWAKGEF LAADKKPGVD FVCAETPGGG FLYNVDSFAF
FKVDGDDRQQ GQALLARLIM GEGFQKTFNL NKGSIPARTD VALDEFDDCA RQSAEAMNAG
AENGSLLPSY AHGMALRGAP AGAITDVVTA HFNSDMTSDE AVEQLANAVA SAM