Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_3396 |
Symbol | |
ID | 4581952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | - |
Start bp | 541860 |
End bp | 542732 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639770710 |
Product | LysR family transcriptional regulator |
Protein accession | YP_917163 |
Protein GI | 119386108 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.356453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCGC AACAGAACAA CCTTCTCGAG ACCGACCTTC TGAAGACATT CGTGACCATC TCCGAGACCG GGAACTTCAC GGTCGCGGCG AAACGGGTAT TCAGAACCCC CTCGGCGGTC AGCATGCAGA TCAGGCGGCT TGAGGATCAG CTGGGGCGCG CCCTGTTTGT GCGGCATCCG CGCCATGTGA CGCTGACCGC GGACGGCGAG GCATTTCTCG TGCATGCCAA GGACATCCTG CGCATCAATG ACGAGGCTCT GTCCCGCTTT CGGGTGCCGC AGCTTGAAGG GCGGGTCCGG TTCGGCGCAC CCGACGATTT CGGCGTGCGC TATCTTCCCG CGATCCTGTC ACGCTTCGCC GCGACCCATC CCCTTGTCGA GGTCGAGGTC TTTCTGTCGA CCAGCGTGAT CTTGGCCCGG CGGTTCGAAG CGGCAGAGAT CGACATGATC CTCACCGTCT CGGCCCAATC CGATCCGGCG CCGGGACAGG TCATTCATTC GGAGCCTCTC GTCTGGGTCG GTGCCCGCGA CGGCATGGCA TTCTCCAGGA CCCCCGTGCC GCTCGCGCTG TCCTCACACG GATGCCCCTG GCGGGCTGCG GCCCTTGCCG CGCTCGACAA GGCCAGTCGC CGTTACAGGA TCGCATACAC GTCGGAGGCC GCAGCCGGCC AGCTGGCGGC AGTCATGGCC GACCTGGCGA TCGCGCCTCT GCCGGTCAGC CTGGTGGACG AGCAGCATCG GCGGCTGACG GAAAAGGAAG GCTTCGGCGC GATCGGTTCC TATCAGCTGA GGCTTCAGAA GAACCCCGAT ATCGGCTCGG CGGCGCAGGC TTTTGCGGAT CATGTGCGCG AGAGCTTTGG TCGGCAGGAA TGA
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Protein sequence | MQPQQNNLLE TDLLKTFVTI SETGNFTVAA KRVFRTPSAV SMQIRRLEDQ LGRALFVRHP RHVTLTADGE AFLVHAKDIL RINDEALSRF RVPQLEGRVR FGAPDDFGVR YLPAILSRFA ATHPLVEVEV FLSTSVILAR RFEAAEIDMI LTVSAQSDPA PGQVIHSEPL VWVGARDGMA FSRTPVPLAL SSHGCPWRAA ALAALDKASR RYRIAYTSEA AAGQLAAVMA DLAIAPLPVS LVDEQHRRLT EKEGFGAIGS YQLRLQKNPD IGSAAQAFAD HVRESFGRQE
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