Gene Pden_3396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3396 
Symbol 
ID4581952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp541860 
End bp542732 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content64% 
IMG OID639770710 
ProductLysR family transcriptional regulator 
Protein accessionYP_917163 
Protein GI119386108 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.356453 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCGC AACAGAACAA CCTTCTCGAG ACCGACCTTC TGAAGACATT CGTGACCATC 
TCCGAGACCG GGAACTTCAC GGTCGCGGCG AAACGGGTAT TCAGAACCCC CTCGGCGGTC
AGCATGCAGA TCAGGCGGCT TGAGGATCAG CTGGGGCGCG CCCTGTTTGT GCGGCATCCG
CGCCATGTGA CGCTGACCGC GGACGGCGAG GCATTTCTCG TGCATGCCAA GGACATCCTG
CGCATCAATG ACGAGGCTCT GTCCCGCTTT CGGGTGCCGC AGCTTGAAGG GCGGGTCCGG
TTCGGCGCAC CCGACGATTT CGGCGTGCGC TATCTTCCCG CGATCCTGTC ACGCTTCGCC
GCGACCCATC CCCTTGTCGA GGTCGAGGTC TTTCTGTCGA CCAGCGTGAT CTTGGCCCGG
CGGTTCGAAG CGGCAGAGAT CGACATGATC CTCACCGTCT CGGCCCAATC CGATCCGGCG
CCGGGACAGG TCATTCATTC GGAGCCTCTC GTCTGGGTCG GTGCCCGCGA CGGCATGGCA
TTCTCCAGGA CCCCCGTGCC GCTCGCGCTG TCCTCACACG GATGCCCCTG GCGGGCTGCG
GCCCTTGCCG CGCTCGACAA GGCCAGTCGC CGTTACAGGA TCGCATACAC GTCGGAGGCC
GCAGCCGGCC AGCTGGCGGC AGTCATGGCC GACCTGGCGA TCGCGCCTCT GCCGGTCAGC
CTGGTGGACG AGCAGCATCG GCGGCTGACG GAAAAGGAAG GCTTCGGCGC GATCGGTTCC
TATCAGCTGA GGCTTCAGAA GAACCCCGAT ATCGGCTCGG CGGCGCAGGC TTTTGCGGAT
CATGTGCGCG AGAGCTTTGG TCGGCAGGAA TGA
 
Protein sequence
MQPQQNNLLE TDLLKTFVTI SETGNFTVAA KRVFRTPSAV SMQIRRLEDQ LGRALFVRHP 
RHVTLTADGE AFLVHAKDIL RINDEALSRF RVPQLEGRVR FGAPDDFGVR YLPAILSRFA
ATHPLVEVEV FLSTSVILAR RFEAAEIDMI LTVSAQSDPA PGQVIHSEPL VWVGARDGMA
FSRTPVPLAL SSHGCPWRAA ALAALDKASR RYRIAYTSEA AAGQLAAVMA DLAIAPLPVS
LVDEQHRRLT EKEGFGAIGS YQLRLQKNPD IGSAAQAFAD HVRESFGRQE