| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3373 |
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| Symbol | |
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| ID | 4581930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 521222 |
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| End bp | 521788 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639770689 |
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| Product | conjugal transfer protein precursor |
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| Protein accession | YP_917142 |
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| Protein GI | 119386087 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.117002 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCGCA GAAACCGCAT CACCTATCTC GCCGCAACCG CTCTCGCGGT TCTGGTGATC
GGCGGCATCT CCGTCACCGA GATCGCGCCC CGGCTGATCT GGAATGCTTC CGCCAGCCTG
CCGCTCGGGC TCTATCGCGT AGAGCCGCCG ATCAACCTCG CCCTCGGCGA TCTGGTCGCG
GTCACGCCGC CCGAACCTCT GGCGCAGTTC GTCACCGCGC GCGGCTATAT CGGCCCCGGC
GTGCCGCTGC TGAAGCGCGT CGCCGCGCTT CCCGGCACGC GGGTCTGCCG CGAGGAAACC
ACGATCACCG TCGACAGCCA GGCCGTCGGC GAGGCGCGCG AACGCGACAG CCTCGGCCGG
CCGCTGCCCG TCTGGCGGGG CTGCCGGCTG ATCGTCGGGG GAGAGATCTT TCTCATGAAC
CGGGACGTCG GGGACAGTCT CGACGGCCGC TATTTCGGCC CGCTCCCGCT CGGCAGCGTC
ACCGCCCGCA TCGTCCCGCT CTGGACCGAT ACGGCGGGCG ACGGCCGCTT TCGCCGGCCC
GCAATTGGGG CGGAAAGCGG CCTCTGA
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| Protein sequence | MTRRNRITYL AATALAVLVI GGISVTEIAP RLIWNASASL PLGLYRVEPP INLALGDLVA
VTPPEPLAQF VTARGYIGPG VPLLKRVAAL PGTRVCREET TITVDSQAVG EARERDSLGR
PLPVWRGCRL IVGGEIFLMN RDVGDSLDGR YFGPLPLGSV TARIVPLWTD TAGDGRFRRP
AIGAESGL
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