| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3302 |
|---|
| Symbol | |
|---|
| ID | 4581863 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 467563 |
|---|
| End bp | 468210 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639770623 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_917076 |
|---|
| Protein GI | 119386021 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.696216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTTGC CTAAATATGT TTGTGACTAC TCACTAACTA GTAGGTGCCC CGTGCGAAAA
TCAGCGGAGC TTCGCAAGGC CGAGATCGTG GCCACCGTGC TCGACCTGGC CGACGGGATC
GGGCCGGACC GGGTGACGAC GGGGGCGGTC GCGTCGCAGA TTGGCGTCAC GCAGGCCGCG
CTGTTCCGGC ATTTCCCGAC CAAGGACGCG CTGTGGCAGG CCGTGGCCGA GCATGTGGCC
GAAGGGCTTG CATTGGCCTG GGATGGGGCC TTGAACCTCG GCGACGGGCC GCTTGTCCGG
CTGCGTGCGC TGATCGCCGC GCAGTTCGCG CAGATCGCCG CCACCCCCGC CCTGCCGATG
CTGCTGTTTT CGCGTGAGTT GAATGTCACC AACGCTGAGC TGCGCGCCAC CTTTCACGGT
AGGCTCACGA CCTTCCACGG CCTTCTGGCG ACGGAGATCA GAACCGCGCA GGAAGCAGGG
GTTCTGCGCG GCGACATGCC CGCAAACGAT GCGGCGGTGC TGCTGACCTC GCTCGTGCAG
GGCGTGGCGA TCCGCTGGGC GCTCGGCGCC CGCGATTTCG ATTTGCGAGC CGAGGGGCTG
CGCCTGTTCG ACGTACAGTG CCGGCTTCTG GCCGCGGAAG GAAAATAG
|
|---|
| Protein sequence | MRLPKYVCDY SLTSRCPVRK SAELRKAEIV ATVLDLADGI GPDRVTTGAV ASQIGVTQAA
LFRHFPTKDA LWQAVAEHVA EGLALAWDGA LNLGDGPLVR LRALIAAQFA QIAATPALPM
LLFSRELNVT NAELRATFHG RLTTFHGLLA TEIRTAQEAG VLRGDMPAND AAVLLTSLVQ
GVAIRWALGA RDFDLRAEGL RLFDVQCRLL AAEGK
|
|---|
| |