| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3200 |
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| Symbol | |
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| ID | 4581764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 364380 |
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| End bp | 365702 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639770524 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_916977 |
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| Protein GI | 119385922 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.460801 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGGAT CCGGCGTCAT CGACAATTTC CTGGCGGTCT TCACCAGCTA TATCGACAGC
GGCTTCGGTC TTCTGGGCGG CGAGGTCGCC TTCATCGCCA CCACGCTGAT CGTCATCGAC
GTGACGCTGG CCGCCCTGTT CTGGGCCTGG GGCGCCGAGG ACGATATTCT GGCCCGGCTG
GTGAAGAAGA CCATCTTCGT CGGCGTCTTC GCCTGGCTGA TCACCAACTG GAACAGTCTC
GCGCGCATCG TCTTCGACAG TTTCGCCGGT CTCGGGCTCA TGGCCTCCGG CACCGGCTTC
ACCGCCGCCG ATCTCATGCG CCCCGGCCGC GTCGCCCAGA CCGGGCTCGA TGCCGGACGG
CCGCTCCTGG AATCCATCTC CGACCTGATG GGCTGGGTCG CGGTGTTCGA GAACCTGATC
CAGATCCTCT GCCTGTTCTT CGCCTGGGCG CTGGTGATCC TCGCCTTCTT CATCCTCGCC
GTGCAGCTCT TCGTCACCCT GATCGAGTTC AAGCTGACCA CGCTCGCGGG CTTCGTGCTG
ATCCCCTTCG GGCTTTTCGG CAAGACCGCC TTCATGGCCG AGCGCGTGCT GGGCAATGTC
GTCTCCAGCG GTATCAAGGT TCTCGTGCTA GCCGTCATCA TCGGCATCGG CAGCACCTTG
TTTTCGCAGT TCACCACCGG CTTCGGCGGT GTCGCGCCGA CCGTGGACGA CGCCATGGCC
ATCGTACTCG CGGCGCTGTC GCTCTTGGGC CTCGGTATCT TCGGGCCCGG TATCGCCACC
GGCTTGGTTT CCGGCGGTCC GCAGCTTGGC GCCGGGGCCG TTGCGGGGAC AGGACTGGCC
GTGGGCGGCG CGGCACTGGC CGCCGGCGGC GCTGCGGTGC TCGGCGCCAA GGGCGTCGCT
GCCACCGCGC GGGGCGGGGC CGCGACGGCG GGGGCCGCCT CCGCCGCCTA TACGCTGAAC
TCGGCCGGAC AGTCCGGGAT CGGCGGCGCC GTCTCCGGGG CCGCCGGTGT CGGCAAAGGC
GCCGGCATCG CCGCCATGAC CCCGCTGCGC CGGGCGGCGG CCAGTCTCAA GGCCAGCCGC
GACGCCGGCG TGAAAGCCGC CTTCACCAGC ACCGGGGGAT CGACCACGCA AGGAACGCTC
GGCGGCCCGG CCGCTGGTGT CGGCGGTGTG GCGCCAACCA GCGGCAATGC GCCCGCCTGG
GCGCAGCGCC TGCGCGGCCA GTCCCTTGCC CGGGGCGCCA CCGTCACCGC CCATGCGGTG
CGCGCCAGTG ACAGCCACGG CCCCGGCGCC TCCGTCTCCC TTTCCGAAAG CGACAAGCCA
TGA
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| Protein sequence | MGGSGVIDNF LAVFTSYIDS GFGLLGGEVA FIATTLIVID VTLAALFWAW GAEDDILARL
VKKTIFVGVF AWLITNWNSL ARIVFDSFAG LGLMASGTGF TAADLMRPGR VAQTGLDAGR
PLLESISDLM GWVAVFENLI QILCLFFAWA LVILAFFILA VQLFVTLIEF KLTTLAGFVL
IPFGLFGKTA FMAERVLGNV VSSGIKVLVL AVIIGIGSTL FSQFTTGFGG VAPTVDDAMA
IVLAALSLLG LGIFGPGIAT GLVSGGPQLG AGAVAGTGLA VGGAALAAGG AAVLGAKGVA
ATARGGAATA GAASAAYTLN SAGQSGIGGA VSGAAGVGKG AGIAAMTPLR RAAASLKASR
DAGVKAAFTS TGGSTTQGTL GGPAAGVGGV APTSGNAPAW AQRLRGQSLA RGATVTAHAV
RASDSHGPGA SVSLSESDKP
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