| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3198 |
|---|
| Symbol | |
|---|
| ID | 4581762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 363267 |
|---|
| End bp | 364064 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639770522 |
|---|
| Product | conjugal transfer protein TrbJ |
|---|
| Protein accession | YP_916975 |
|---|
| Protein GI | 119385920 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.184031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCA ATACGACCGC TATCCCGCAC CCCGTTCGCC GCATCGCCAG CACCACGGCA
CTCGCCGTCG CGCTCGCCAT CCCGCTGGCG CTGGCCCCTG TCCTCACGAC ACCGGCCCAT
GCCTTCTTCG GTGGTTTTGG GCGGATCGTC TACGACCCGA CCAACCATGC CGAGAACCTG
CTGACCGCCG CCAGGTCGCT GGAGCAGATC AACAACCAGA TCGCCTCGCT GCAGAACGAG
GCGCAGATGC TGATCAACCA GGCCCGCGAT CTCGCCAGCC TGCCGCATAG CTCGCTGCAG
CAATTGCAGC AGAACGTCAC CCGCACCCAG CAGTTGCTCG ACGAGGCCCA GAACATCGCC
TTCGAGGTGC AGGAGGTCGA TCAGGCTTTC GAGCGGGAAT ACGGCACGCC GGATCTCTCG
ACATCCGAGC AGCAACTGCT GGCCGATGCC CGGACGCGCT GGAGCAACAC CATGGGCGGG
CTTCAGGACG CCATGCGCGT CCAGTCCGGC GTCACCAACA ACATCGAGGC GCAGCGGGCC
GAGATGGCCG CGCTGGTCGA GCAGAGCCAG AATGCTGACG GCGCCTTGCA GGCCAGCCAG
GCCGGCAACC AGTTGCTGGC CCTGCAATCG CAGCAACTGT CCGACCTCAC CGCGCTCCTC
GCCGCCACCG GCCGGGCCGA GGCACTGAGC GAGGCCGAGC GCTCGGCGGC GGCCGAACAG
GGCCGCATCC AGCGCGAACG GTTTCTGACA CCCGGCGCCG GCTACCAGCC CGGCAATGCC
CGGATGTTCA ACGACTGA
|
|---|
| Protein sequence | MTRNTTAIPH PVRRIASTTA LAVALAIPLA LAPVLTTPAH AFFGGFGRIV YDPTNHAENL
LTAARSLEQI NNQIASLQNE AQMLINQARD LASLPHSSLQ QLQQNVTRTQ QLLDEAQNIA
FEVQEVDQAF EREYGTPDLS TSEQQLLADA RTRWSNTMGG LQDAMRVQSG VTNNIEAQRA
EMAALVEQSQ NADGALQASQ AGNQLLALQS QQLSDLTALL AATGRAEALS EAERSAAAEQ
GRIQRERFLT PGAGYQPGNA RMFND
|
|---|
| |