| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3188 |
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| Symbol | |
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| ID | 4581752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 354719 |
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| End bp | 356728 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639770512 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_916965 |
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| Protein GI | 119385910 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCA CGAAGATCCT CTGGGGCCAG ATCGCCGTGG TTTTCCTGAT CGTGCTGATC
TCGGTCTGGT CGGGCACGCA ATGGGCGGCC TGGCGGCTCG GCTTCCAGCC CCAGCTCGGC
CCGGCCTGGT TCGAACTCTG GGGTATCCCG ATCTATTACC CGCCCGCCCT GTTCTGGTGG
TGGTACTTTT ACGACGCCTA TGCCCCGCGC ATCTTTGCCG AGGGCGGCGT CATCGCCGCC
TCGGGCGGGT TTCTCGCCAT CGGTGTCGCC ATCACCCTGT CGGTGATGCG CGCCCGCGAG
GCCGCCGATG TCGACACCTA CGGCTCGGCG CGTTGGGCAG CGCGGCCGGA GATCGAGCGG
GCGGGGCTGC TCGGCCCCGA CGGCGTGGTG CTGGGCAAGC TGGGCGAGGA CTACCTGCGC
CATGACGGGC CGGAGCATGT GCTTTGCTTC GCGCCGACGC GCTCCGGCAA GGGCGTTGGG
CTGGTGGTGC CGACGCTGCT GACCTGGCCG GGCTCGACCA TCGTCCACGA CATCAAGGGC
GAGAACTGGC AGCTCACCGC AGGGTTCAGG GCCAGGCATG GCCGGGTATT GCTCTTTGAT
CCGACCAATG CGGCCTCCGC TGCCTACAAT CCCCTGCAGG AGGTGCGGCG CGGCGAATGG
GAGGTGCGCG ACGTCCAGAA CATCGCCGAT ATCCTGGTCG ATCCCGAGGG CTCGCTGGAA
AAGCGCAACC ATTGGGAAAA GACCAGCCAC GCCCTGCTGG TCGGCGTCAT CCTGCATGTG
CTCTATGCCG AGGAGGACAA GACCCTGGCG CGCGTCGCCG CCTTCCTCTC CGACCCGCGC
CGCTCGATCG AGGCGACGCT GGCGGCGATG ATGAAGACCC CGCATCTCGG CGAGGCCGGC
CCGCATCCGG TCATCGCCAG CGCCGCGCGG GAACTGCTGA ACAAATCCGA GAACGAACGC
TCAGGCGTGC TGTCCACCGC CATGTCCTTC CTCGGCCTCT ATCGCGACCC CGTCGTCGCC
CAGGTCACCA GCCGCTGCGA CTGGCGTATC GCCGATCTGA TCGCGGCGGA AAAACCCTCG
ACGCTTTACC TGGTGGTCCC GCCCTCGGAT ATCTCGCGCA CCAAGCCGCT GATCCGGCTG
GTGCTGAACC AGATCGGCCG CAGGCTGACC GAGGATCTGC ATGCGAAGGA CCGCGGGCAC
CGGGTGCTGA TGCTGCTCGA CGAATTCCCG GCGCTGGGGC GGCTGGACTT CTTCGAATCC
GCCCTGGCCT TCATGGCCGG CTATGGGCTG AAGGCTTTCC TGATCGCGCA GTCGCTGAAC
CAGATCGAAA AGGCCTATGG CCCCAACAAT TCGATCCTCG ACAACTGCCA TGTCCGGGTC
AGCTTCGCCA CCAACGACGA GCGCACCGCC AAGCGGGTCT CGGACGCCCT CGGCACCGCC
ACCGAGATGA AGGCGATGAA GAACTATGCC GGGCACCGGC TGGCGCCCTG GCTCGGGCAT
ATCATGGTCT CGCGCTCCGA GACCGCGCGG CCGCTGCTCA CCCCGGGCGA GGTGATGCAG
CTGCCGCCCG AAGACGAGAT CGTCATGGTG GCCGGCACCC CGCCGATCCG GGCCAGGAAG
GCGCGCTACT ATACCGATCC GCGTTTCCGC GAGCGGATGC TGTCCCCGCC GGATCCGCGC
GAGGCTGTGC CGTCGGCGCG GGCGGACGAC TGGACCGGGC TGACGCCGCC GAAGCCGGAT
GGTTTGGTCG AAAAAACGGA CGTCAAAAAA GAAGAGGGCA GGGCGAAGCG CCAGGACAAG
GCCAATTCCG GCCTGCGCCG CGAGCCGGAA CTGCCCGAGC ATGTCGAGAT CGTCCACGAG
AGGAAGGAAC CATCGCCGGA GGACGAGTTC AGGCATCTGC TCGGCGACGA TCAGGAGGAT
GCGGTCCGGC AACGCCAGGC CCTGCGCCGC AAGATGGCTG GTGTTGCCCG GCAGACCTCG
ATGGATCCCG GCGACGACAT CCCGATGTGA
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| Protein sequence | MSGTKILWGQ IAVVFLIVLI SVWSGTQWAA WRLGFQPQLG PAWFELWGIP IYYPPALFWW
WYFYDAYAPR IFAEGGVIAA SGGFLAIGVA ITLSVMRARE AADVDTYGSA RWAARPEIER
AGLLGPDGVV LGKLGEDYLR HDGPEHVLCF APTRSGKGVG LVVPTLLTWP GSTIVHDIKG
ENWQLTAGFR ARHGRVLLFD PTNAASAAYN PLQEVRRGEW EVRDVQNIAD ILVDPEGSLE
KRNHWEKTSH ALLVGVILHV LYAEEDKTLA RVAAFLSDPR RSIEATLAAM MKTPHLGEAG
PHPVIASAAR ELLNKSENER SGVLSTAMSF LGLYRDPVVA QVTSRCDWRI ADLIAAEKPS
TLYLVVPPSD ISRTKPLIRL VLNQIGRRLT EDLHAKDRGH RVLMLLDEFP ALGRLDFFES
ALAFMAGYGL KAFLIAQSLN QIEKAYGPNN SILDNCHVRV SFATNDERTA KRVSDALGTA
TEMKAMKNYA GHRLAPWLGH IMVSRSETAR PLLTPGEVMQ LPPEDEIVMV AGTPPIRARK
ARYYTDPRFR ERMLSPPDPR EAVPSARADD WTGLTPPKPD GLVEKTDVKK EEGRAKRQDK
ANSGLRREPE LPEHVEIVHE RKEPSPEDEF RHLLGDDQED AVRQRQALRR KMAGVARQTS
MDPGDDIPM
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