Gene Pden_3162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3162 
Symbol 
ID4581726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp336263 
End bp337168 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content63% 
IMG OID639770486 
Productintegrase catalytic subunit 
Protein accessionYP_916939 
Protein GI119385884 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.116464 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.334205 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGGTT TCATCGACGC GCATCGGGAT GCGCACGGGG TCGAGCCGAT CTGCGACGTT 
CTGCCGATCG CCCCTGCCAC CTATTATGAC CATCTGGCCA AACGTGCCGA CCCGGCGCGG
TTGTCGGATC GTGCCAAACG GGACGAGGCG CTGCGCCCCG AGATACGGCG TGTTTTCGAG
GACAACTGGA GCGTCTACGG CCTGCGCAAG GTCTGGCACC AGCTGCGCCG CGAGGGCTTC
GATATCGCTT GCTGCACGGT GGCACGGCTG ATGAAGGACA TGGGCATTCA AGGCATTGTC
CGGGGCAAGC CGCACAAGAC GACGATCCCT GACAAGAAGC AGCCATGCCC GCTGGACAAG
GTGAACCGCC AGTTCCGCGT GCCTGCGCCG AACATGCTGT GGGTCAGCGA TTTCACCTAT
GTTGCCACCT GGAAGGGGTT TGTTTATGTC GCTTTCGTCA TCGACGCTTA TGCCCGCAAG
ATTGTCGGCT GGCGGGTCAG CACCTCGGCG TATGCCGGGT TCGTCCTTGA TGCCCTCGAA
CAGGCGGTCC ATGACCGCCG CCCGGTCAAG GGCATGGGGC TGGTTCACCA CAGCGACCGC
GGCAGCCAGT ATCTGTCGAT CAAATACACT GAACGGCTGG CCGAGGCGGG CATCGAGCCT
TCGGTTGGCA GCGTCGGTGA CAGCTACGAC AACGCGCTGG CCGAGACGAT CAACGGGCTC
TTCAAGGCCG AGGTCATCCA CCGTCGGGGG CCCTGGCGCA GCTTCGAGGC CGTGGAATAC
GCAACCCTCG AATGGGTGGA CTGGTTCAAC AACCGCCGCC TGCTCGAGCC GATCGGGAAC
ATCCCGCCCG CCGAAGCCGA GGCAAACTTC TACGCGGCTC TGGAAACTGA AGCCATGGCC
GCGTAA
 
Protein sequence
MVGFIDAHRD AHGVEPICDV LPIAPATYYD HLAKRADPAR LSDRAKRDEA LRPEIRRVFE 
DNWSVYGLRK VWHQLRREGF DIACCTVARL MKDMGIQGIV RGKPHKTTIP DKKQPCPLDK
VNRQFRVPAP NMLWVSDFTY VATWKGFVYV AFVIDAYARK IVGWRVSTSA YAGFVLDALE
QAVHDRRPVK GMGLVHHSDR GSQYLSIKYT ERLAEAGIEP SVGSVGDSYD NALAETINGL
FKAEVIHRRG PWRSFEAVEY ATLEWVDWFN NRRLLEPIGN IPPAEAEANF YAALETEAMA
A