Gene Pden_3148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3148 
Symbol 
ID4581712 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp325116 
End bp326492 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content70% 
IMG OID639770472 
Productprotease Do 
Protein accessionYP_916925 
Protein GI119385870 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.398511 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATGA AAATCCCCCG ACTGCGCGCG GCCGTCATCA CGCTGTGCAC GATCCTGGCG 
CTGGTCGCGC CGCCCCAAGC GGCTGTCGGG CAGCCCATGC CCGAGGCTGG GGGCGGTATT
CCCACCATTG CCCCGATGCT GTCGCGCGTG ACCCCGGCGG TGGTCAATAT CGCGGTGGTC
TCGGAAACCC CGGTAGTATC GAACCCGCTT TACAACGATC CCTATTTCCG CCGCTTCTTC
GATCTTCGCG ACCCGCCGAT GCGGCGGCAG ATGAGCGCCG GCTCCGGCGT GATCGTCGAT
GCCGAAAACG GCTATGTGCT GACCAACCAT CACGTCGTCG CCGAGGCCAG CGCGATCAGC
GTCACCCTGA AGGACGGGCG CCAGTTCCGG GCCGAGCTCG TCGGCGCCGA CCAGGCCACG
GAAATCGCCC TGCTGCGGAT CGAGGCCGAG GATCTGGTCG CGCTGGAGAT CGGCGATTCC
GACCGCCTTC AGGTCGGCGA TTTCGTCGCC GCCATCGGCA ACCCCTTCGG CCTGGGCCAG
ACGGTGACCT CGGGCATCGT CAGCGCGCTG GGGCGCAGCG GCATCAGCCG CGAGGGCTAT
GAGGATTTCA TCCAGACCGA CGCCTCGATC AACCCGGGCA ATTCGGGCGG CGCGCTGGTG
ACGCTGGACG GCCGGCTGGT CGGCATCAAC ACCGCCATCC TGACCCCGGC AGGGGGCAAT
ATCGGCATCG GCTTCGCGGT GCCCAGCAAC ATGGCCGTCG CGGTGATGCG GCAGCTGATC
GAGCACGGCG AGGTGCGGCG CGGCAGGCTG GGCATCGGCA TGCACGATCT GACGCCCGAC
CTGGCCGAGG CGCTGGAGCT GGGCGGCATC CACGGCGCGG TGATCGCGAA TGTCGAGCCC
GGCTCTCCCG CCGAGAAGGC GGGGCTGAAG GCGGGGGACG TGGTGACCGC TGTCGACGGC
GCCCCGGTGC AGGGCGCCAC GCATCTGCGA AACCGGCTGG GCCTGACGCC CGTCGGCAGC
ACCATCCGCC TGACGGTCAG GCGCGAGGGG GATGCGCGGG AGGTCGACCT GACCATCACC
GCCGATGCGA CCTCCTCCGG TGATTTCGCC GGCACGCCGC TGGATGGCGC CCGGCTGCGC
AACGCCTCGG CGGAGGAGGC GCGCCGGGCG GGGGGTGCCG GGATCATGGT CGACAGCGTC
GAGCCGGACA GCCTTGCGGC CTGGATCGGC CTGCGCCGCG GCGACATGAT CGTCGCCGTC
AACCGGACGC CGGTTTCCTC GGTCGCGGAT TTGCGTGACA TGCTTGCCGG CCACCGAGCC
GTCGCGGCGC TGGAACTGAT CCGCGACGGC AGCCGTCTTT TCATCGTCGC AAGGTGA
 
Protein sequence
MSMKIPRLRA AVITLCTILA LVAPPQAAVG QPMPEAGGGI PTIAPMLSRV TPAVVNIAVV 
SETPVVSNPL YNDPYFRRFF DLRDPPMRRQ MSAGSGVIVD AENGYVLTNH HVVAEASAIS
VTLKDGRQFR AELVGADQAT EIALLRIEAE DLVALEIGDS DRLQVGDFVA AIGNPFGLGQ
TVTSGIVSAL GRSGISREGY EDFIQTDASI NPGNSGGALV TLDGRLVGIN TAILTPAGGN
IGIGFAVPSN MAVAVMRQLI EHGEVRRGRL GIGMHDLTPD LAEALELGGI HGAVIANVEP
GSPAEKAGLK AGDVVTAVDG APVQGATHLR NRLGLTPVGS TIRLTVRREG DAREVDLTIT
ADATSSGDFA GTPLDGARLR NASAEEARRA GGAGIMVDSV EPDSLAAWIG LRRGDMIVAV
NRTPVSSVAD LRDMLAGHRA VAALELIRDG SRLFIVAR