| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3082 |
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| Symbol | |
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| ID | 4581646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 263530 |
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| End bp | 267024 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639770406 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_916859 |
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| Protein GI | 119385804 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.184876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.275156 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGACGT GCAATACGAT TGGGAATCGC AAGTTCCTGC TCAGACGGCT TGGCGGGTCG
ACGGCTGGGC TGGCTCTGCT TGTCGGGCTG GGCCTGGCAT CATCTCCGGC CTTATCCGAT
CCAAGGTCAG TCCCACTTGA TTACCTGTAT GTTAAGGACG ACAAGGGGAA TGACGAGCTC
AGTCGCATCA CCATCTGGGT TTCCACAAAT GATGGTCAGC GACGGCAGAT GCTGTTCGAC
ACCGGTTCGG ATAGCGCCAA TATGCAGCTC GGTTCCGATG TCAGCGGGGT GAAACCGACA
CCGGGCACTG AGCCCCGAGG CTATTTCTAT GGTGACGGCA CCTATGGCTA CCTGTTGCAG
CAGGTCGATG TAGATGACAT CGCCTATCAT GCAGCAGACG GCTCCGAGAG CTTTACCCTG
CCGGTTGCGG GGCAATCCAC CTATCAGGTG GCGCGGATCG TCGATGTCAT TTACACGGCC
GATTACACGG GGCCGGAAAA GCCGATGCTG AGCGCGGATC CTGTCTATGT CGTTACCAAC
GAGGATGGGT CGAAGACAGC CTATTATGCC GACCTCAATG CCCGCAAGCA GATGGCACAG
GACAAGCCCA TTGACGATGG CGGAACCCTT TGGGGAACCT TCGGTGCCGG CGACTACCTG
GGCCGCGAAT GGGCAAGCAC ATCGGGGCTG ATCGGGCGGG CGACGAAGAC GGGCTATGTC
ATTGCCGCCA ACGGCAATAC CGAGTCGGGC AAGCAGGGTC TTACACCGGG TTGTTCCCCC
TGCCTGATCG TGGATGTGAA TTCTGCGGTT CGTGCACAGT TCACCTCGGT CATGCCCTGG
GGCGACAAGA ATGGCGACGA CGCCAAGGGT ACCTTGCCTA ACTTCCCCGG ATCTGGCGCA
CCTGCCTCTG CCGAGTTCGA GGGGAATTAC ACCCTGGCAT TCGGTGACGA TGATGCCGCC
CCCAGCCTCA CCAAGGTTGC CACGTTGCTG GACACCGGAA CACCAGGCGG TGGGCAGATC
ACCATCAGCA CGGCGCGTCT GAATGCCCTT GTCGCGTCCG GGGTCAGGGT CGACATCGAC
AAGGATGGCA ACAAGACGAT CCCTTCGCTG AATCTTGTGG CGGGGGAGGG TATGCCGGTC
GGTCTTTCCA ACATTGATGT CGTCGAGATC GAGGGGAACG CAGACACGCC GGTGCAGTTC
ATAGCTGGTA TGGACTTCTT TGTGAGCCAG TCGGTCATGT ATGACCTGGA AAACCAGTCC
ACCGCCTATA CGCCATATTT TGTCAGCGCC AACAATTTCA CCACGGATAC CCCTGCTGTG
GACGAAATCG GGCTGTCGCG GGTAACGGCA GAGATGGGCA GCCCGTTTCC CATGAAGGAT
GATGACGGGA CCGAATACAC CGTTGGCTAT TTCGGCGCGG CCGGGGTGAT CTCGGGCGCT
GGCGATCTGA CGGTGGCAAA ACACGCCCAG TTGCGGCTTT CCAATGCCAA CACCTATACC
GGTCAGACCG TGATTGAGAC GGATGGCAAG CTCGAACTGG CCGGCATCGG CAGCATCGAA
ACCTCGTCGC GGGTGGTGGC GGATGGCACG CTGGACATCG GCGACAAGGG TAATCGCATC
GCATTCTGGG GGGTGTCAGA TGCGTATAAT GATGCGCGGA TTCGCAGCCT GTCCGGCTCT
GGCACGGTGC TGCTTTACGA CCGCAATCTG GTGCTGACGG CGGCGCAGGA CAGTTTCAGA
GGGACGATCA CCGACCTTGA CGCGGAAAAC ACGCATCACG GCGGCGGCCT GATCGTTCAG
GGTGGCGTGC AGACGCTGGC CGGCAACAAT CAGTATACCG GTGCGACCAG GATCAATACC
GGTGCAGGAT TGGTCCTGAC CTCGAAAGGG TCGCTTGCCA GTAAGGTTCT TGTTTCCGGC
GGTTTTGCCA ATGACGGCAC CGTGAATGAT CATACGACCG TGCAGAATGG CGGCACGGCA
GGCGGCACGG GCACCTTCCA CGGCTTGACG GTAGCCGATG GCGGCGCGGT AGCCACAGGC
GGCGCGGTAC CGTTGAAGGT TGAAGGAAGC TTTACCCAGC AGGCAGGCTC GACCCTCGTA
TTCGGTCCGG TGGCTGGGGG TGCCCAACCC GGTATCGCTG TCTCGGATCA GGCGTTGATC
GAAAATGGCG CAAGCGTAAC ACTTGACCGC GCCACGGCTG GGCGACTGTC GCTGGGACGC
GAGTATCTGT TGCTGGACGC AACTGGCGGC GTCTCTGGTG GTTATAACAT GCTGGCGGGG
GATCTGGTGA CGGATGCACC GTTCCTCAGC TTTGCGCTGA ACAATTCTCC TGCCAATGTT
GTGCTGGAGG TGAGGCGTTC GGATATCGCC TTCGCCGATG TGGCACAAAG CGCGAACCAG
GCTTCTTCGG CTTTCGGGCT GGAGTCACTG GGCAGCGGCA ACCCGCTTTA TGATGAGGCA
CTTTATCTAG GTGCCTCTGA GGCGGCGAGC GCCTTCGACT CGGTCTCGGG CGAGATCCAT
GCATCAATGC AGGGGGCGTT GATCGACGAA AGCCACTTTC TGCGCGATGC GGTAAACGGA
CGTCTGCGCG CAGCATTCGG GACGGTCGGC GCCTCGAAGA GTGGCGTAAT GGCCTTGACC
GCCGACGGGG CGGTCGATGC CGTCGCCACG ATTGATGGGC CGGTCTATTG GGGCCATGCC
TTTGGCGCCC GGGGTCGGAC AGATGGCGAT GGCAATGCTG CGCAGCTTGA CCGCAGAACC
CACGGCCTTG TCCTTGGCTA TGATGCGCCA GTCGAGGATT GGCGGCTGGG CGGCGTGCTG
GCGATGAGCG ACAGCTCGTA TGACGTGGAT GATCGAGTTT CCTCAGGATC AGGAAACGGG
ATCCATCTCG GGGCCTATGC CGGCACGGAA TGGGGGCAGA CTGCCCTGCG TGCCGGGTTG
ACCTATTCGG ATTACCGCTT GAAGACAGAT CGCCACGCCG CCATCGGTGA AATGGCCGCG
CCGCTCTCGT CGAAATATAA TGGGCATGTC TGGCAAGCGT TTGCGGAGGT CGGCCACCGT
GTCGATCACG GCAACATGGC ACTGGAGCCC TATGCCGGGC TGGCCCATGT CCGGTTGCGC
ACAGACAGCT TCGCCGAACG TGGCGGCAGC ATGGCGCTTG GGGGTGCAGA AGGGGTGATG
AACACGACCT TCACCATGAT CGGGTTGCGC GCGGCTACGA CGATCAGATC TGCTGAGCAT
GACCTCGCGG TCAGCGGCGG AATCGGCTGG CGCCATGCCT TCGGTGACGT TGACCCGGAA
CTGGCAATGG CCTTTGCCGG GGGCGCAAAC TTCGACATCG CCGGCGCGGC AATTGCCCGC
AACGCGGCTG TGCTGGACCT GGGCGTCGAC ATGAACCTTG GAAAGAAGGC AATCATGCGA
CTGGACTATC AGGGCCAGCT TGCCTCGGAC GCGCGCGAGC ACCGCCTTGG CGCCACCTTC
AGTATGCGTT TCTAG
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| Protein sequence | MVTCNTIGNR KFLLRRLGGS TAGLALLVGL GLASSPALSD PRSVPLDYLY VKDDKGNDEL
SRITIWVSTN DGQRRQMLFD TGSDSANMQL GSDVSGVKPT PGTEPRGYFY GDGTYGYLLQ
QVDVDDIAYH AADGSESFTL PVAGQSTYQV ARIVDVIYTA DYTGPEKPML SADPVYVVTN
EDGSKTAYYA DLNARKQMAQ DKPIDDGGTL WGTFGAGDYL GREWASTSGL IGRATKTGYV
IAANGNTESG KQGLTPGCSP CLIVDVNSAV RAQFTSVMPW GDKNGDDAKG TLPNFPGSGA
PASAEFEGNY TLAFGDDDAA PSLTKVATLL DTGTPGGGQI TISTARLNAL VASGVRVDID
KDGNKTIPSL NLVAGEGMPV GLSNIDVVEI EGNADTPVQF IAGMDFFVSQ SVMYDLENQS
TAYTPYFVSA NNFTTDTPAV DEIGLSRVTA EMGSPFPMKD DDGTEYTVGY FGAAGVISGA
GDLTVAKHAQ LRLSNANTYT GQTVIETDGK LELAGIGSIE TSSRVVADGT LDIGDKGNRI
AFWGVSDAYN DARIRSLSGS GTVLLYDRNL VLTAAQDSFR GTITDLDAEN THHGGGLIVQ
GGVQTLAGNN QYTGATRINT GAGLVLTSKG SLASKVLVSG GFANDGTVND HTTVQNGGTA
GGTGTFHGLT VADGGAVATG GAVPLKVEGS FTQQAGSTLV FGPVAGGAQP GIAVSDQALI
ENGASVTLDR ATAGRLSLGR EYLLLDATGG VSGGYNMLAG DLVTDAPFLS FALNNSPANV
VLEVRRSDIA FADVAQSANQ ASSAFGLESL GSGNPLYDEA LYLGASEAAS AFDSVSGEIH
ASMQGALIDE SHFLRDAVNG RLRAAFGTVG ASKSGVMALT ADGAVDAVAT IDGPVYWGHA
FGARGRTDGD GNAAQLDRRT HGLVLGYDAP VEDWRLGGVL AMSDSSYDVD DRVSSGSGNG
IHLGAYAGTE WGQTALRAGL TYSDYRLKTD RHAAIGEMAA PLSSKYNGHV WQAFAEVGHR
VDHGNMALEP YAGLAHVRLR TDSFAERGGS MALGGAEGVM NTTFTMIGLR AATTIRSAEH
DLAVSGGIGW RHAFGDVDPE LAMAFAGGAN FDIAGAAIAR NAAVLDLGVD MNLGKKAIMR
LDYQGQLASD AREHRLGATF SMRF
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