Gene Pden_3077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3077 
Symbol 
ID4581641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp256692 
End bp259682 
Gene Length2991 bp 
Protein Length996 aa 
Translation table11 
GC content70% 
IMG OID639770401 
Productgene transfer agent (GTA) like protein 
Protein accessionYP_916854 
Protein GI119385799 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.759421 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.242623 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCGCG ACGATCAGGA CCGCCCGGTC TATGGCGGTA CACCCTCCGA CTTCGCCGTG 
GTGCAGGCGA TCCAGGAGAT GAAGGCGCGC AGGCTGCGGG TAACCTTCTA TCCCTTCATC
CTGATGGACG TTCCGCCCGG CAACACCCTG CCGAACCCCT ATTCCGACAA CGCCGCCGAG
ACCGGCCAAC CTGCCTTCCC GTGGCGGGGC CGGATCACCT GTTCTCCGGC TGCGGGGTTC
GCGGGGAGCG TCGACAAGAC CCCGACGGCG GCGACGCAGG TCGCGGCGCT ATTCGGCGGG
GCTACACCCG CGAACTTCTC CGTATCTGGC GAAACCGTCA ACTGGACCGG CCCTGCCGGT
GACTGGGGCC TGCGCCGGAT GATCCTGCAC TATGCCCATC TCTGTGCGGC CGCCGGGGGC
GTCGATGCCT TCCTGATCGG CTCGGAGATG CGCGGGCTGA CCACCATCCG CTCGGGCGCC
AGCAGCTACC CCGCCGTGCA GGCCTTCCGT GATCTGGCGG CAGCCGTGCG CGCCATCCTC
GGGCCGGGCA CGAAGATCAG CTACGCGGCC GACTGGTCGG AGTATTTCGG GCACCAGCCA
GGCGATGGCA GCGGCGACAT GTTCTTCCAT CTCGATCCGC TCTGGGCCGA TCCCGAGATC
GATTTCGTCG GCATCGACAA CTACATGCCA CTGTCCGACT GGCGCGACGG GTTCGAGCAT
GCCGACGCCG CCGATGGCTG GCCTGCCATC TACGACCGGG CCTACCTTCA GGCGCACATC
GCCGGCGGCG AAGGGTTCGA CTGGTTCTAC TCCTCGGCCG CCGACCGCAC CGCGCAGGTC
CGCACCCCGA TTACCGACGG CGCCCACGAC AAGCCATGGG TCTTCCGATA CAAGGATCTG
CTCGCCTGGT GGTCTAACCC GCATTACAAC CGCCCGGGTG GGGTCGAGAG CGGCACGCCG
ACGGCATGGG TGCCGCAGTC GAAGCCGATC TGGTTCACCG AGCTCGGCTG CCCGGCCATC
GACCGCGGCA CCAACCAGCC GAATGTCTTT TTTGATCCGA AGTCGTCAGA GAGCTTCACG
CCGTACTTCT CGCGCGGCTG GCGCGACGAC GCCATCCAGC GCGCCTATCT GGAGGCGACG
TATCTCTGGT GGGGTCAGGG CGCGAACAAC CCGCTGTCTA CCGTCTACGG AGGCCGGATG
GTGCATGTCC CCGAATGCGC CGCCTGGACC TGGGACGCGC GGCCCTATCC CTTCTTCCCG
GCACTGACCG GCGTCTGGAC CGATGGTCCG AACTGGCGGC TCGGCCATTG GCTCACCGGG
CGGCTGGGCG CGGTCTCGCT CGCGGCCCTC GTCCGGCACC TGTGCCTGCG CGTCGGGTTG
CCCGAAAGCC GCATCGACGT CACCGGCCTG TGGGGCGCGG TCGAGGGCTT TGTCATCGGG
GCGCTGGAAA GCCCGCGTGC CTCGATCACC ACGCTTGCAC GGCATTTCGG CTTCGATGCC
GTCGAGACCG AGGACGTGAT CCGCTTTGTC ATGCGCGGCC GGGCCTCCAT CGCGACCGTC
GCGCCCGACG ATCTTGTCGC CACACGCGAG GGCGACGTGC TGGAACTGAC GCGCGGCCAG
GAGACCGAGC TGCCGCAGGC GCTGAAATGG CAGCTGGCCC GTGCCGACGA GGATTACGAC
GCCGCCCTCG TCGAGGCGCG GCGCATCACG GTGGACACGA CCCGGATCGC CTCGGAATCC
TTCCCGATGG CGGTGCCGCC CGAGGAGGCC GAGCGCCGCT GCCGCCGCGC ACTGATGGAG
GCGTGGGTGG GGCGCGAGAC GGCGGCGTTC CGCCTGCCGC CCTCGCGGCT TGCGCTCGAT
CCCGCCGACG TCATCCGGCT CGCCCATGAC GGGCGGGAGA TCGAGTTCCG TCTCGTCTCC
GTCGCGGATG CCGAAGCCCG CGGTATCGAG GCGGTCCGCC AGGACCGGGC GACCTACGAC
CTGCCGCCCG GCGATCCCCG CGCGGCGTCG CTGACGCGCG CTGTCGTGTT CGGGGCGCCG
GATGCGGTGC TGATGGACCT GCCGCAGCTG ACCGAGGACC AGCCCGCGCA TCGGCCGCTG
GTCGGCGCGC ACGCCGTGCC CTGGCCGGGC GAGATGGCGG TGTTCCGCAG TCCTTCGACG
GACGGGTTCG AACTGCTGAC CAGCTTCGGC GCGCGAGCCC GCCTCGGCGC GCTGGTCTCG
GACTTCTACG CGGGGCCGAC GTCGCGCTTC GACCTCGGCA ACGCTCTGGT CATCGATCTG
CTGACCGGCA CGCTGGAGAG CGTCACCGAC CTGACCTTGT TCGGCGGTGC GAACGCGCTC
GCCGTCGAGA GCGCACCCGG CGCTTGGGAG ATCGTGCAGG CGGGCGTGGC CGAACTGCTG
GCGCCCGGTC GCTACCGCCT GACCCGGCTC CTGCGCGGCC AGCGCGGCAC CGAGGGTGCG
ATGGGCAACC CGACCCCGGC CGGTGCCCGC ATGGCGGTGC TGGACGCCTC GTTGAAACCG
CTGCCCATCG CCGAGGCCGA TCTCGGCATC CCCTGGAACT GGCGCATCGG CCCGGCGAGC
CGCCCGGTCA GCGACGAGAC CTATGTGGCG CAGAGCTTCA CGCCGGTGGG CATGGGGCTG
CGGCCGTTCT CGGTCGCCCA TGTCGAGCAG CCATGGCGCA CGCCGCGCAC ACCGGCCGAC
CTCACAATCC GCTGGACGCG GCGGTCCCGC GTGCTCTCGG CCGACAACTG GGGCGCGGTC
GAAGTGCCGC TCGCCGAGGA AGTTGAAGCT TACCAGGTCG AGATCCTCGA CGGCGCCGCC
GTGAAGCGGG TGCTCGGCAC GGGCACCACC AACGCGCTCT ACACCGCCGC CCAGCAGACC
GCCGATTGGG GCGCACCGCT CGGCCCCGGC AACACCCTCA CCATTCGCAT CTTCCAGCTC
TCCGCCCTCG TCGGGCGGGG CGCGGCGCAG ATCGTCACCC TCACCTTCTG A
 
Protein sequence
MNRDDQDRPV YGGTPSDFAV VQAIQEMKAR RLRVTFYPFI LMDVPPGNTL PNPYSDNAAE 
TGQPAFPWRG RITCSPAAGF AGSVDKTPTA ATQVAALFGG ATPANFSVSG ETVNWTGPAG
DWGLRRMILH YAHLCAAAGG VDAFLIGSEM RGLTTIRSGA SSYPAVQAFR DLAAAVRAIL
GPGTKISYAA DWSEYFGHQP GDGSGDMFFH LDPLWADPEI DFVGIDNYMP LSDWRDGFEH
ADAADGWPAI YDRAYLQAHI AGGEGFDWFY SSAADRTAQV RTPITDGAHD KPWVFRYKDL
LAWWSNPHYN RPGGVESGTP TAWVPQSKPI WFTELGCPAI DRGTNQPNVF FDPKSSESFT
PYFSRGWRDD AIQRAYLEAT YLWWGQGANN PLSTVYGGRM VHVPECAAWT WDARPYPFFP
ALTGVWTDGP NWRLGHWLTG RLGAVSLAAL VRHLCLRVGL PESRIDVTGL WGAVEGFVIG
ALESPRASIT TLARHFGFDA VETEDVIRFV MRGRASIATV APDDLVATRE GDVLELTRGQ
ETELPQALKW QLARADEDYD AALVEARRIT VDTTRIASES FPMAVPPEEA ERRCRRALME
AWVGRETAAF RLPPSRLALD PADVIRLAHD GREIEFRLVS VADAEARGIE AVRQDRATYD
LPPGDPRAAS LTRAVVFGAP DAVLMDLPQL TEDQPAHRPL VGAHAVPWPG EMAVFRSPST
DGFELLTSFG ARARLGALVS DFYAGPTSRF DLGNALVIDL LTGTLESVTD LTLFGGANAL
AVESAPGAWE IVQAGVAELL APGRYRLTRL LRGQRGTEGA MGNPTPAGAR MAVLDASLKP
LPIAEADLGI PWNWRIGPAS RPVSDETYVA QSFTPVGMGL RPFSVAHVEQ PWRTPRTPAD
LTIRWTRRSR VLSADNWGAV EVPLAEEVEA YQVEILDGAA VKRVLGTGTT NALYTAAQQT
ADWGAPLGPG NTLTIRIFQL SALVGRGAAQ IVTLTF