Gene Pden_3053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3053 
Symbol 
ID4581617 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp232485 
End bp233912 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content66% 
IMG OID639770377 
Productamidase 
Protein accessionYP_916830 
Protein GI119385775 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.807445 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGTG ACATTCTTGA TCTCGATGCG ACAGCGCAGG CTGCGGCCGT CGCGAAGGGC 
GATGTCAGCG CGGCAGAGCT GGCCCGCGCC GCGATTGCGA GGATCGAGGC CGGGGAGCCC
GTGCTCAATG CGGTGACGCA GCGCTTTTTC GATCAGGCGC TCGATATGGC ATCAGCCGAT
CTGCCGCCGG GGCCGTTTCG CGGCGTGCCC TTTCTGGTGA AGGACTTTTA CTGCCATATG
GCGGGAACCC CGACCACCGG CAGCGCAAAG CTGCTGGAGC ACAACTTGAT CGACCATGAC
AGCGCACTGA TGGCTCGCTA TCGCCAGGCG GGGTTTGTGA CGCTCGGCAA GACCAATGTG
CCGGAAATGG TCACCATGGG CACGACCGAG CCGGTCTGGC GCGGCCCCAC GCGTAACCCC
TGGAATACCG GTCATACGCC GGGCGGGTCT TCGGGTGGCT CGGCGGCGGC GGTCGCGGCG
GGATATGTCG CGGTGGCCCA TGCCAATGAT GGCGCCGGAT CCATCCGCAT CCCGGCCTCA
TGCTGCGGTC TCTTCGGGCT GAAGCCTTCG CGGGCCCGGG TCACGCTCGG GCCGGATGTT
GGCGAGGCCA TCGGTGGCAT CACGGCGGAA CATGTGGTTT CGCGATCCGT GCGGGACAGT
GCGGCGGTGC TCGACGCCAC CGCCGGAGCC CTGCCGGGAG ACCCCTATAT CGCCCCCGAG
CCGCCGGAAG GCTTCCTTGC CGCCATCGCC AGACCGCGCA AGGGGCTGCG GATCGGCCTG
ACGCTCGATG CGCCGGACGG CACCAGCGCC GCGCCGGAAT GTCAAGCTGC GGCTCTGCGG
GCGGCGGTGC TCTTGCGTGA TCTTGGTCAT CAGGTCGAGG AGGTCACGTT GCCCTTCGAC
GGCGCCGCCT TCCGCGCGGC GCTCTCCACC TTCTGGCCGA TGACCGTGAC CCGGGGCCTC
AGCGCGATTG CGGAGGCCCG GGACGCGGAC CCCGAAGTTC TGTTGCGCGA GCTTGAGCCC
TTTAACCAGC ATCTCTTCGC TCTTGGGATC TCGCGCCGGG CGGTAGATTA CATCCGGGAT
CTTGTGATCT TTCAGGGAAT GGCGCGGGCC ATGGGGCAGT TCTTTGCCAC ACAGGATATC
TGGCTTTCGC CGGTCCTGCC CTTCACGCCG CCCCGGCTTG GCTATTTTGA TGCGGGTGTC
CTGGGCGGGG AAACGGCCTG GAACCGGGTG CTCGACTCCT TCATGTTCAC TGCGCCCGCC
AATGTCACCG GCCTGCCTTC TGCCAGCTTG CCGATGACCG TGTCGAATGA GGGGCTTCCC
ATAGGCATCC AGTTGACGGC GAAGCTGAAT GACGAAGCGC TCATCTTCAA CCTCGCAGCG
CAGCTTGAAG CCGCAAACCC CTGGGCGATG CCTAGGCACA AGATCTAA
 
Protein sequence
MISDILDLDA TAQAAAVAKG DVSAAELARA AIARIEAGEP VLNAVTQRFF DQALDMASAD 
LPPGPFRGVP FLVKDFYCHM AGTPTTGSAK LLEHNLIDHD SALMARYRQA GFVTLGKTNV
PEMVTMGTTE PVWRGPTRNP WNTGHTPGGS SGGSAAAVAA GYVAVAHAND GAGSIRIPAS
CCGLFGLKPS RARVTLGPDV GEAIGGITAE HVVSRSVRDS AAVLDATAGA LPGDPYIAPE
PPEGFLAAIA RPRKGLRIGL TLDAPDGTSA APECQAAALR AAVLLRDLGH QVEEVTLPFD
GAAFRAALST FWPMTVTRGL SAIAEARDAD PEVLLRELEP FNQHLFALGI SRRAVDYIRD
LVIFQGMARA MGQFFATQDI WLSPVLPFTP PRLGYFDAGV LGGETAWNRV LDSFMFTAPA
NVTGLPSASL PMTVSNEGLP IGIQLTAKLN DEALIFNLAA QLEAANPWAM PRHKI