Gene Pden_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3000 
Symbol 
ID4581566 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp173274 
End bp174281 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content73% 
IMG OID639770326 
Productvon Willebrand factor, type A 
Protein accessionYP_916779 
Protein GI119385724 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0367852 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGTT TCGCCTGGCC GCCCGCGCTC TTCGCCCTGC CGCTGCTGCT GCTGCCGCTG 
GTCATCCGCT GGCTGCGGGC ATCCGCCGTG CCGCGGCTGG ACCTGCGGGC GGTCGAAGGA
CGCGCGGTCG GCCCGCTGTT GGTGGCGCTG GCGATGCTGG CGCCGGCGGC ACTGATCCTC
GGCCTTGCCC AGCCCTATCT GCGCGGCGGC AGCACCGCCT ATCGCGGCAT CGGCACGAAC
CTGGTGCTGC TGATCGACCG CTCCTCCAGC ATGGACGACA CCTTCGCCGG GCGCTCGCCG
CAAGGGGGCG ACGAAAGCAA GGCCGCCGCC GCGCGGCGTA TCCTGCTGGA CTTCATCGCC
CGCCGTCCCG ACGACCGCAT CGGCATCGCC GCCTTTTCCA CCGCGCCGAT GCTGGTGCTG
CCGATGACCG AAAGCCGGAC CGCCATTGCC GCCGCCGTCG CCGCCCTGGC CGAGCCGGGC
CTGTCCCAGA CCGATGTGGG CCGCGGCCTG ACCCTGGCGA TGGGGATGGC GCATGAGGCA
TCGGCCAGCG ACTCGCGCGC CGTGGTGCTG GTCAGCGACG GGGCGGCGGT CATCGCGCCC
GAGGTCCAGA CCGCGCTGCG CAACCTGGCG GCGCGCCGGC AGGTCAACAT CTATTGGCTC
TACCTGCGCA CCAAGGGCGC GAAGGGCATC TTCGAGGTGC CCGAGCCCGG CCAGGCCGAC
ACCCCGCACC TGCGCCCCGA GCGGCACCTG CATATCTTCC TGCAAAGCCT GGGCCTGCCC
TATCACGCCT TCGAGGCCGA CAGCCCCGGC GCGGTCGAGG ACGCCGTGAC CGAGATCGGG
CGCATGGAAT CCCGCCCCAT CCTGACCCGC CGCCCGGTGC CACGCCGCGA CCTGGCCTGG
GCCTGCCATC TGCTGGCCTC GCTGTGCTGC GCGGCGCTGG CGGCCGCCCG CTGGCTCGAG
CGGCGCTATG CCCCTCGCCG CCCCGCGCCC CTGCTGGTCC CGGCATGA
 
Protein sequence
MIGFAWPPAL FALPLLLLPL VIRWLRASAV PRLDLRAVEG RAVGPLLVAL AMLAPAALIL 
GLAQPYLRGG STAYRGIGTN LVLLIDRSSS MDDTFAGRSP QGGDESKAAA ARRILLDFIA
RRPDDRIGIA AFSTAPMLVL PMTESRTAIA AAVAALAEPG LSQTDVGRGL TLAMGMAHEA
SASDSRAVVL VSDGAAVIAP EVQTALRNLA ARRQVNIYWL YLRTKGAKGI FEVPEPGQAD
TPHLRPERHL HIFLQSLGLP YHAFEADSPG AVEDAVTEIG RMESRPILTR RPVPRRDLAW
ACHLLASLCC AALAAARWLE RRYAPRRPAP LLVPA