Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_2953 |
Symbol | |
ID | 4581520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | - |
Start bp | 121116 |
End bp | 122165 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639770280 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_916733 |
Protein GI | 119385678 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.851486 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCGCGA CGCCAATCAT GGACGAATCG CGACAGATGC CCGGACACGA CCCCTCGCCC GACCTCAACC AGCCGCGATT GCAGATCGGC TTCCTGCTGA CGCCGCGCTT CACGCTGTCG GCCTTTGCCA CTTTCGTGGA CGTGCTGCGG CTGGCGGCCG ACGACGGCGA CGGCTCGCGC CCCATCCGCT GCCGCTGGCG GGTGCTTTCG GCCGACATGG CGCCGGTGCA ATCCTCCTGC GGCATGCGGA TCGAGCCCGA GGAACGGCTG GGCGATCCCG GCCGCTTCGA CTACATCATC ACCGTGGGCG GGCTGATCGA CGGCGGCCCT GGCCTCTCGC CGGAACAGGC CGCCTTCCTG CGCCGCGCCG CCATGGGGCG GGTGGCGCTC GGCGGACTTT GCACCGGGGT CTTCGCCATG GCCCGCATCG GGCTGATGGA CGGTTATCGC TGCTGCGTAA GCTGGTTCCA CCATCAGGAT TTCCTGGCGG AGTTCGAAAG GATGCGCCCG GTCTCGGACC AGATCTTCGT GGTGGACCGC GACCGGATCT CCTGCTCGGG CGGGGTCAGC GCCGCGCATC TGGCCGCCTT CCTGATCGAC CGGCACCTGG GCCGCGCCGC GGCGCGCAAG GCGCTGTCGA TCCTGATGAT CGACGAGCCG ATGGCCGGCG ACCGCCCGCA GCCCGGCCTG CCGCTGGAAC TCAATGCCCG CGACCCGCTG GTGCGCCGCG CCCTGCTGGC CATGCAGCAG AACCTGCACG CCCCCCTGCC AATCGCCCGC ATCGCCAGGG ATCTGGGCGT CGGGCGGCGC AAGCTGGAAC GGCATTTCAA CGCCGACCTG GGCATCCCGC CCGCCGATGC CTCGATCCGC ATCCGGCTGG CGCAGGCCCG CATGCTGCTG GCGCGCACCG ACCGCACCGT CACCCGCATC GCCGAAGAGA CCGGCTTCTG CGACGCCTCG CACCTGATCC GCGTCTTTCG CGAGACCGAG GGCACCACCC CCGACCTCTG GCGCCAGAAC CGCGGCCTGC TGGCCGAGGA CGCCCCCTAG
|
Protein sequence | MIATPIMDES RQMPGHDPSP DLNQPRLQIG FLLTPRFTLS AFATFVDVLR LAADDGDGSR PIRCRWRVLS ADMAPVQSSC GMRIEPEERL GDPGRFDYII TVGGLIDGGP GLSPEQAAFL RRAAMGRVAL GGLCTGVFAM ARIGLMDGYR CCVSWFHHQD FLAEFERMRP VSDQIFVVDR DRISCSGGVS AAHLAAFLID RHLGRAAARK ALSILMIDEP MAGDRPQPGL PLELNARDPL VRRALLAMQQ NLHAPLPIAR IARDLGVGRR KLERHFNADL GIPPADASIR IRLAQARMLL ARTDRTVTRI AEETGFCDAS HLIRVFRETE GTTPDLWRQN RGLLAEDAP
|
| |